Prupe.6G044400_v2.0.a1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
3225380 .. 3226349
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G044400.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 612 bp
ATGATGCCAACATCTGCAAAACTAAGTTCTGGTTTCTACAACAAAGTGTGCCCTCAGGCACTGCCAGCTATCAGAAAAGTCGTCAAACGGGCCATCAGCCATGAGCCACGCACCGGAGCCTCTCTACTTCGCCTTCATTTCCATGACTGCTTTGTTAATGGTTGCGATGGATCAGTTCTGCTTGATGATACTGCCAACTTCATCGGTGAGAAGACCGCCTTCCCAAATCTGAATTCGATCCGGGGATTCAACGTGATGGATGATATCAAAAAAGCTATATTAGCTGTTGCAGCTCGTGATTCTGTATCCATTTTGGGAGGACCTGATTACAAAGTACAATTAGGAAGAAGGGATGCAAGAAATGCAAACAGAAATCTTCCACCCCAATTCTTCAGCTTCTCACAGCTTCTCTCTAACTTCCAAGCTCATGGACTTAACCTGAAAGACTTGGTTGTGTTCTCAGCTGCCCACACCATTGGACTTGCTCGGTGCACCACCTTCCGTGCCAGGATTTACAATGATACCAACATAGACCCCAAGTTTGCAGCCTCTGCAAAATACAATTGTCCAACAACTGGAGGAGATAACAACACAAGGCCACTAGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

204

Amino Acids

22.19

Weight (kDa)

9.67

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 575
AciI CCGC 1 cut(s) 216
AclWI GGATC 2 cut(s) 178, 232
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 376
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 113, 575
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AluBI AGCT 8 cut(s) 68, 275, 284, 293, 396, 406, 425, 464
AluI AGCT 8 cut(s) 68, 275, 284, 293, 396, 406, 425, 464
Alw21I GWGCWC 1 cut(s) 494
Alw44I GTGCAC 1 cut(s) 490
AlwI GGATC 2 cut(s) 178, 232
AlwNI CAGNNNCTG 2 cut(s) 61, 551
AoxI GGCC 2 cut(s) 90, 596
ApaLI GTGCAC 1 cut(s) 490
ApeKI GCWGC 3 cut(s) 290, 464, 545
ApoI RAATTY 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AspS9I GGNCC 2 cut(s) 90, 320
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 320
AxyI CCTNAGG 1 cut(s) 54
BaeGI GKGCMC 2 cut(s) 53, 494
BauI CACGAG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 494
BbvI GCAGC 3 cut(s) 302, 451, 557
BccI CCATC 3 cut(s) 101, 161, 250
BciT130I CCWGG 1 cut(s) 508
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 242
BfaI CTAG 1 cut(s) 602
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 3 cut(s) 291, 465, 546
BlsI GCNGC 3 cut(s) 292, 466, 547
Bme1390I CCNGG 2 cut(s) 242, 508
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 90, 320
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 242, 508
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 575
Bse1I ACTGG 1 cut(s) 580
Bse21I CCTNAGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 265, 358
BseLI CCNNNNNNNGG 2 cut(s) 113, 575
BseMII CTCAG 2 cut(s) 68, 474
BseNI ACTGG 1 cut(s) 580
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 2 cut(s) 53, 494
BseXI GCAGC 3 cut(s) 302, 451, 557
BshFI GGCC 2 cut(s) 92, 598
BsiHKAI GWGCWC 1 cut(s) 494
BsiSI CCGG 2 cut(s) 114, 241
BslI CCNNNNNNNGG 2 cut(s) 113, 575
BsnI GGCC 2 cut(s) 92, 598
Bsp1286I GDGCHC 2 cut(s) 53, 494
Bsp143I GATC 2 cut(s) 170, 237
BspACI CCGC 1 cut(s) 216
BspANI GGCC 2 cut(s) 92, 598
BspCNI CTCAG 2 cut(s) 67, 473
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 178, 232
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 170, 237
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 508
BstAPI GCANNNNNTGC 2 cut(s) 362, 551
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 23, 54, 460
BstF5I GGATG 2 cut(s) 265, 358
BstKTI GATC 2 cut(s) 173, 240
BstMBI GATC 2 cut(s) 170, 237
BstMWI GCNNNNNNNGC 5 cut(s) 65, 281, 290, 362, 551
BstNI CCWGG 1 cut(s) 508
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 2 cut(s) 240, 506
BstSLI GKGCMC 2 cut(s) 53, 494
BstV1I GCAGC 3 cut(s) 302, 451, 557
BstV2I GAAGAC 1 cut(s) 218
BstXI CCANNNNNNTGG 2 cut(s) 428, 476
Bsu36I CCTNAGG 1 cut(s) 54
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 92, 598
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 265, 358
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 2 cut(s) 61, 551
Cfr13I GGNCC 2 cut(s) 90, 320
Csp6I GTAC 1 cut(s) 335
CviAII CATG 4 cut(s) 101, 143, 428, 607
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 3 cut(s) 23, 54, 460
DpnI GATC 2 cut(s) 172, 239
DpnII GATC 2 cut(s) 170, 237
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 376
Eco81I CCTNAGG 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 506
EcoRV GATATC 1 cut(s) 265
FaeI CATG 4 cut(s) 104, 146, 431, 610
FaiI YATR 6 cut(s) 102, 144, 278, 429, 530, 608
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 4 cut(s) 100, 142, 427, 606
Fnu4HI GCNGC 3 cut(s) 291, 465, 546
FokI GGATG 2 cut(s) 272, 365
Fsp4HI GCNGC 3 cut(s) 291, 465, 546
FspBI CTAG 1 cut(s) 602
GluI GCNGC 3 cut(s) 291, 465, 546
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 2 cut(s) 92, 598
HapII CCGG 2 cut(s) 114, 241
Hin1II CATG 4 cut(s) 104, 146, 431, 610
HinfI GANTC 2 cut(s) 246, 299
HpaII CCGG 2 cut(s) 114, 241
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 2 cut(s) 74, 231
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 492
HpyAV CCTTC 4 cut(s) 143, 229, 342, 508
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 7 cut(s) 17, 290, 356, 365, 492, 545, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 281, 290, 362, 551
HpyF3I CTNAG 3 cut(s) 23, 54, 460
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 104, 146, 431, 610
Kzo9I GATC 2 cut(s) 170, 237
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 3 cut(s) 302, 451, 557
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 602
MaeII ACGT 1 cut(s) 252
MalI GATC 2 cut(s) 172, 239
MboI GATC 2 cut(s) 170, 237
MboII GAAGA 4 cut(s) 223, 357, 368, 382
MfeI CAATTG 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 53, 494
MluCI AATT 4 cut(s) 232, 338, 386, 562
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 5 cut(s) 63, 130, 311, 559, 572
MseI TTAA 2 cut(s) 156, 435
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 114, 241
MspR9I CCNGG 2 cut(s) 242, 508
MunI CAATTG 1 cut(s) 562
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 5 cut(s) 65, 281, 290, 362, 551
NciI CCSGG 1 cut(s) 242
NdeII GATC 2 cut(s) 170, 237
NlaIII CATG 4 cut(s) 104, 146, 431, 610
NlaIV GGNNCC 1 cut(s) 118
NspI RCATGY 1 cut(s) 610
PfeI GAWTC 2 cut(s) 246, 299
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 3 cut(s) 292, 466, 547
PpuMI RGGWCCY 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 90, 320
PspPPI RGGWCCY 1 cut(s) 320
PstNI CAGNNNCTG 2 cut(s) 61, 551
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 156, 435
SatI GCNGC 3 cut(s) 291, 465, 546
Sau3AI GATC 2 cut(s) 170, 237
Sau96I GGNCC 2 cut(s) 90, 320
ScrFI CCNGG 2 cut(s) 242, 508
SduI GDGCHC 2 cut(s) 53, 494
SfaNI GCATC 1 cut(s) 343
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 4 cut(s) 232, 338, 386, 562
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 602
StyD4I CCNGG 2 cut(s) 240, 506
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 236
TasI AATT 4 cut(s) 232, 338, 386, 562
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 2 cut(s) 246, 299
Tru1I TTAA 2 cut(s) 156, 435
Tru9I TTAA 2 cut(s) 156, 435
TscAI CASTG 1 cut(s) 66
TseI GCWGC 3 cut(s) 290, 464, 545
TspDTI ATGAA 2 cut(s) 125, 190
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 575
VneI GTGCAC 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 610
XspI CTAG 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.