Prupe.6G046500_v2.0.a1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
3348452 .. 3350051
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G046500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 483 bp
ATGCTCATCAACAAGACCCTGTTCTGGTGGATGCACAAACTCATGGACGAGATGAGCACTGAAATCGCATGCTTCGGCCTTGGAAATGTTCATGTATTCCCTGTCACTTGCCCGAAACTCAGCCGCAAGTTCTTGGAGAAACAAGATGCAACTTATGCCGGCCTGGAAAGACTAGTCCAAGAGTCAGATTTGTCACGGCTCAACTATGTCAAGGCTTGTGCTAGAGAGGCCTTTCGCCTCCACCCCATTGCACCCTTTAATGTCCCCCACGTATCCATTCTCCAACACGACACCTGGGATGAACCTCTCAAGTTTATGCCTGAGCGCCATCTCAAGGAAGATGATCGTCTGTGCACTGGAATGTGTGGCTGCGTAACGACTGCACTTGGCACTTCAAAGACTGTCATGTTATTTGCTAGGCTTCTTCATGGGTTTAGTTGGAATGTGCCACCCACTGAGTCCAGAATTGACCTCACCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210
Pfam Domains
Protein Families
p450

Protein Analysis

161

Amino Acids

18.41

Weight (kDa)

6.65

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 24, 334
AgsI TTSAA 1 cut(s) 396
AhlI ACTAGT 1 cut(s) 172
AjnI CCWGG 2 cut(s) 162, 293
Alw21I GWGCWC 2 cut(s) 59, 356
Alw44I GTGCAC 1 cut(s) 352
AoxI GGCC 3 cut(s) 76, 160, 228
ApaLI GTGCAC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 466
BaeGI GKGCMC 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 59, 356
BbvI GCAGC 1 cut(s) 356
BccI CCATC 1 cut(s) 336
BceAI ACGGC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 2 cut(s) 164, 295
BciVI GTATCC 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 3 cut(s) 173, 222, 417
BfoI RGCGCY 1 cut(s) 328
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 2 cut(s) 124, 370
BlsI GCNGC 2 cut(s) 125, 371
Bme1390I CCNGG 2 cut(s) 164, 295
BmrFI CCNGG 2 cut(s) 164, 295
BmsI GCATC 2 cut(s) 21, 136
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 293, 317
BsaAI YACGTR 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 79, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 334
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 164, 295
BseDI CCNNGG 2 cut(s) 79, 294
BseGI GGATG 2 cut(s) 36, 304
BseLI CCNNNNNNNGG 2 cut(s) 24, 334
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 3 cut(s) 133, 312, 447
BseNI ACTGG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 3 cut(s) 78, 162, 230
BsiHKAI GWGCWC 2 cut(s) 59, 356
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 24, 334
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 3 cut(s) 78, 162, 230
Bsp1286I GDGCHC 2 cut(s) 59, 356
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 124
BspANI GGCC 3 cut(s) 78, 162, 230
BspCNI CTCAG 3 cut(s) 132, 313, 448
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 79, 294
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 164, 295
Bst4CI ACNGT 1 cut(s) 403
BstAPI GCANNNNNTGC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 70, 160
BstDEI CTNAG 3 cut(s) 119, 321, 456
BstF5I GGATG 2 cut(s) 36, 304
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 155, 227
BstNI CCWGG 2 cut(s) 164, 295
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 162, 293
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 356
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 3 cut(s) 78, 162, 230
BtsCI GGATG 2 cut(s) 36, 304
BtsIMutI CAGTG 3 cut(s) 57, 354, 453
Cac8I GCNNGC 2 cut(s) 70, 160
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 158
CviAII CATG 5 cut(s) 43, 69, 92, 406, 428
CviJI RGCY 8 cut(s) 78, 123, 162, 199, 215, 230, 369, 421
CviKI_1 RGCY 8 cut(s) 78, 123, 162, 199, 215, 230, 369, 421
DdeI CTNAG 3 cut(s) 119, 321, 456
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 162, 293
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 5 cut(s) 46, 72, 95, 409, 431
FaiI YATR 8 cut(s) 44, 70, 93, 156, 207, 317, 407, 429
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 42, 68, 91, 405, 427
Fnu4HI GCNGC 2 cut(s) 124, 370
FokI GGATG 2 cut(s) 43, 311
Fsp4HI GCNGC 2 cut(s) 124, 370
FspBI CTAG 3 cut(s) 173, 222, 417
GlaI GCGC 1 cut(s) 326
GluI GCNGC 2 cut(s) 124, 370
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 78, 162, 230
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 327
Hin1II CATG 5 cut(s) 46, 72, 95, 409, 431
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 2 cut(s) 182, 458
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 462
Hpy8I GTNNAC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 34, 149, 251, 354, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 227
HpyF3I CTNAG 3 cut(s) 119, 321, 456
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 5 cut(s) 46, 72, 95, 409, 431
HspAI GCGC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 1 cut(s) 343
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 2 cut(s) 21, 136
MaeI CTAG 3 cut(s) 173, 222, 417
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 103, 192, 373
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 2 cut(s) 350, 416
MhlI GDGCHC 2 cut(s) 59, 356
MluCI AATT 1 cut(s) 465
MlyI GAGTC 2 cut(s) 191, 467
MmeI TCCRAC 2 cut(s) 307, 419
MnlI CCTC 4 cut(s) 220, 248, 315, 482
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 164, 295
MvaI CCWGG 2 cut(s) 164, 295
MwoI GCNNNNNNNGC 2 cut(s) 155, 227
NaeI GCCGGC 1 cut(s) 160
NdeII GATC 1 cut(s) 343
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 46, 72, 95, 409, 431
NmuCI GTSAC 2 cut(s) 103, 192
NspI RCATGY 1 cut(s) 72
PaeI GCATGC 1 cut(s) 72
PceI AGGCCT 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 160
PkrI GCNGC 2 cut(s) 125, 371
PleI GAGTC 2 cut(s) 190, 466
PpsI GAGTC 2 cut(s) 190, 466
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 162, 293
PspGI CCWGG 2 cut(s) 162, 293
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 124, 370
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 2 cut(s) 191, 467
ScrFI CCNGG 2 cut(s) 164, 295
SduI GDGCHC 2 cut(s) 59, 356
SetI ASST 4 cut(s) 273, 296, 307, 474
SfaNI GCATC 2 cut(s) 21, 136
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 308, 332
SmoI CTYRAG 2 cut(s) 308, 332
SpeI ACTAGT 1 cut(s) 172
SphI GCATGC 1 cut(s) 72
Sse9I AATT 1 cut(s) 465
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 1 cut(s) 124
SspMI CTAG 3 cut(s) 173, 222, 417
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 162, 293
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 1 cut(s) 273
TasI AATT 1 cut(s) 465
TauI GCSGC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 3 cut(s) 64, 361, 460
TseFI GTSAC 2 cut(s) 103, 192
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 2 cut(s) 103, 192
TspDTI ATGAA 3 cut(s) 80, 315, 416
TspRI CASTG 3 cut(s) 64, 361, 460
VneI GTGCAC 1 cut(s) 352
XceI RCATGY 1 cut(s) 72
XspI CTAG 3 cut(s) 173, 222, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.