Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3523008 .. 3523968

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G049500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGATGAACCTCTGCAAACTACTGTCTTCAAAGAAACCCGAAATCCTCATCACCTTCGTTGTCACCGAAGAGTGGCACGGCTTCATGGGCTCCGACCAGAAACCCCACAACATCCGGTTTGCCACTGTACCAAACCTCATACCCTCCGAGCTTGTTCGCGCAAACGACTTTCTTGGATTCGTGGAAGCTGTGAACACCAAGTTGGAAGCTCCGGTTGAGCAGCTACTGGACCGGCTTGAGCTGCCGGTGAGCACCATAGTTGCTGATCCCTACGTTGTTTGGGCTACGAGGGTCGCAAGCCGGAGGAATATTCCGGTGGCTTCGCTCTGGCCCATGTCGGCGTCGGTGTTCTCAGTCTTACTTCACATCGAGACACTCGAACAAAAGAGCCACTTCCCTCTTAATAATGTCTCAGAGTGGGGAGATGATGAGGTAATAGCAGATCTAGATCTTCCCACGGTGTTGAATGGAGACGGTCTGCAAATCGTGAAGATGAACCTGGAAGTTGTGCGTAGCATATATAAAGCACAATATCTTGTGTCCTCTTCAGTCTATGAACTTGCACTACTACAAAAAAGCAAAAAGACGACGGTAAATCACCGTCGTGTATTTGGTTTTTCAATGGTCGTGGAATCCACCGTCATCTTTTCCCTCATAAACCACGACGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0008194 GO:0009909 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0080043 GO:0080044 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

225

Amino Acids

25.2

Weight (kDa)

5.87

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	30, 466, 621
AjnI	CCWGG	1 cut(s)	498
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AleI	CACNNNNGTG	1 cut(s)	603
AluBI	AGCT	5 cut(s)	151, 188, 209, 223, 241
AluI	AGCT	5 cut(s)	151, 188, 209, 223, 241
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	3 cut(s)	365, 415, 465
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	220, 241
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	229, 330
AsuHPI	GGTGA	4 cut(s)	43, 55, 259, 590
AvaII	GGWCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	228, 232
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	3 cut(s)	365, 415, 465
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	2 cut(s)	442, 448
BisI	GCNGC	2 cut(s)	221, 242
BlsI	GCNGC	2 cut(s)	222, 243
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	229, 330
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	456
BsaWI	WCCGGW	3 cut(s)	114, 211, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	2 cut(s)	231, 244
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	366, 426
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	228, 232
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	6 cut(s)	115, 212, 232, 245, 301, 314
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	3 cut(s)	365, 415, 465
BsmBI	CGTCTC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	92, 254
Bsp143I	GATC	3 cut(s)	265, 442, 448
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	365, 425
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	260
BsrFI	RCCGGY	2 cut(s)	231, 244
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	2 cut(s)	231, 244
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	3 cut(s)	265, 442, 448
BssNI	GRCGYC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	7 cut(s)	24, 127, 460, 476, 592, 602, 640
Bst6I	CTCTTC	2 cut(s)	63, 550
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	352, 412
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	268, 445, 451
BstMAI	GTCTC	3 cut(s)	365, 415, 465
BstMBI	GATC	3 cut(s)	265, 442, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 241
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	228, 232
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	442, 448
BstYI	RGATCY	2 cut(s)	442, 448
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	2 cut(s)	231, 244
Cfr13I	GGNCC	2 cut(s)	229, 330
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	2 cut(s)	85, 334
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	352, 412
DpnI	GATC	3 cut(s)	267, 444, 450
DpnII	GATC	3 cut(s)	265, 442, 448
Eam1104I	CTCTTC	2 cut(s)	63, 550
EarI	CTCTTC	2 cut(s)	63, 550
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	2 cut(s)	88, 337
FaiI	YATR	9 cut(s)	86, 140, 257, 335, 518, 520, 522, 555, 656
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	2 cut(s)	84, 333
Fnu4HI	GCNGC	2 cut(s)	221, 242
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	221, 242
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	221, 242
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	6 cut(s)	115, 212, 232, 245, 301, 314
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	88, 337
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	177, 632
HpaII	CCGG	6 cut(s)	115, 212, 232, 245, 301, 314
HphI	GGTGA	4 cut(s)	43, 55, 259, 590
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	94, 148, 415
Hpy188III	TCNNGA	3 cut(s)	370, 446, 487
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	4 cut(s)	346, 592, 606, 668
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	7 cut(s)	24, 127, 460, 476, 592, 602, 640
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	15, 481, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 241
HpyF3I	CTNAG	2 cut(s)	352, 412
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	88, 337
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	265, 442, 448
LmnI	GCTCC	2 cut(s)	95, 214
Lsp1109I	GCAGC	2 cut(s)	228, 232
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	267, 444, 450
MboI	GATC	3 cut(s)	265, 442, 448
MboII	GAAGA	5 cut(s)	18, 80, 443, 502, 537
MflI	RGATCY	2 cut(s)	442, 448
MhlI	GDGCHC	2 cut(s)	92, 254
MmeI	TCCRAC	2 cut(s)	117, 183
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	603
MspI	CCGG	6 cut(s)	115, 212, 232, 245, 301, 314
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	87, 241
NdeII	GATC	3 cut(s)	265, 442, 448
NlaIII	CATG	2 cut(s)	88, 337
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 375
PfeI	GAWTC	2 cut(s)	177, 632
PkrI	GCNGC	2 cut(s)	222, 243
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	229, 330
PsrI	GAACNNNNNNTAC	2 cut(s)	549, 581
PstNI	CAGNNNCTG	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	442, 448
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	221, 242
Sau3AI	GATC	3 cut(s)	265, 442, 448
Sau96I	GGNCC	2 cut(s)	229, 330
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	92, 254
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	7 cut(s)	24, 127, 460, 476, 592, 602, 640
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	369, 378
TfiI	GAWTC	2 cut(s)	177, 632
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	220, 241
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	20, 73, 509, 570
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	445
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.