Prupe.6G055000_v2.0.a1

NAD(P)H-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
3862660 .. 3871134
8475 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G055000.1_v2.0.a1.CDS.11

Sequence Viewer

Length: 1302 bp
ATGAGTTATGATCTTCAAGAATGTGAGAGATGTTTGATTTCATCTACCAAAGACTCGGTGATGGTGGTGACCAAGGACGAGTACGAAAAATGCCATTCTGCTCATCCCATCTTCTTCTCCAACAATGGTTTGACCGTGTTCACATTGGACCGGCCTGGTCCGAATCCCGTATCGGATATGCTACTATACGCATCGGATACGTATCGGAGTCAACGGATACAGTCTTTGATGCACGGACAACTCGTTTTTAGAGGTTTTAAGAGGGAAAATAAAGAGGAGAGAAGCTTTAATTGTTGCTGGTTGAAAAATTCGAAGAGTTTGCCAGCCAGTATTAAAATGGAGACTTATTTTATGTCTCAAGATTTATGGGACACAGTTGATAGTGGCTTCAATAATCCAGAAAATCCAACCGTGGAACAGTTGAGCGTTGTGGCACCTATAGTTATGGGAACTTTGATTTTCCAGGCCTCTTTAGCAATCACGTCCCCTTATACTTTGTTGGAACAAAGAAATTCTTTTCGAAGATGGGTCTGGCTTGCCACATTGCAAAAATTCACAGTGAGCAAGGGAGGCGTTGATGCTGCAGCTGCTTTGTCAATCTATTGGTGTGATTTGAAAGACAAAGTTGCTGGCTTAGCACTGGTACAGAGCCCCTATGGTGGCACTCCCTTGGCTTCTGATATTCTTCGCGAACGCCAAATTGTGGACGAAGAAACCCGCAGGATCATGGAACTTTTAATATGCAAGCTAATTAAGGCATCTGTTGAGCACAATGCATGGGAACTCAAGCAATACATTGAGGAGTTTTACTGGGAATCCGGTAAGCGTGTGATGCTGCTGGGCAAAGCAAGGAAGCGATTTTTCAAACTTCATCTCTCTGTGCATCTATCTTTGCTAATTGTTCGCACAAGTCGTGATTGGGATACTGTTGGTTACACATCAGGCTTTGACACTGTATGTGTGCCATTTTCTTCTTTGAAGCCGATATTTCAAGCAAGAACTGTATCAGATGCACCACCTTTTGACCCCAGCAATATTGTGTCATTGCAGCTCATGTTTAGCAAGTTTGAATTTGATGGGAAACTGAATCCTACTTTTGTGGAAGGGGCATTTAAGCTCCCATTATCAAGCATACGAGCATATCTAAAAGAGCCTATTACTCCCAGGTTCGTACACTTAGGTTCTGCAGGAGCTACCCGACCTGACAGGCCTGGACTTGATCTAAGTAAACAACCTCCTGCTGTTCGCTTAAACAAGGAATTGGATTTTATACTGACATTCAAGTTGAAGGTTTCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

49.27

Weight (kDa)

8.75

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 1 cut(s) 690
AciI CCGC 1 cut(s) 718
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 4 cut(s) 307, 511, 551, 1070
AfaI GTAC 3 cut(s) 83, 645, 1173
AfiI CCNNNNNNNGG 2 cut(s) 659, 703
AjiI CACGTC 1 cut(s) 483
AjnI CCWGG 4 cut(s) 154, 462, 1163, 1210
AluBI AGCT 6 cut(s) 285, 587, 748, 1051, 1117, 1193
AluI AGCT 6 cut(s) 285, 587, 748, 1051, 1117, 1193
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 2 cut(s) 335, 360
AlwI GGATC 1 cut(s) 731
AoxI GGCC 3 cut(s) 152, 465, 1208
ApeKI GCWGC 5 cut(s) 581, 584, 587, 835, 1048
ApoI RAATTY 4 cut(s) 307, 511, 551, 1070
AspS9I GGNCC 2 cut(s) 148, 158
AsuHPI GGTGA 2 cut(s) 70, 79
AsuII TTCGAA 2 cut(s) 311, 520
AvaII GGWCC 2 cut(s) 148, 158
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 653
BarI GAAGNNNNNNTAC 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 771
BbvI GCAGC 5 cut(s) 568, 574, 596, 822, 1060
BccI CCATC 4 cut(s) 55, 116, 519, 1070
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 4 cut(s) 156, 464, 1165, 1212
BciVI GTATCC 3 cut(s) 190, 210, 916
BcoDI GTCTC 2 cut(s) 335, 360
BfmI CTRYAG 3 cut(s) 438, 582, 1185
BfuI GTATCC 3 cut(s) 190, 210, 916
BisI GCNGC 5 cut(s) 582, 585, 588, 836, 1049
BlpI GCTNAGC 1 cut(s) 634
BlsI GCNGC 5 cut(s) 583, 586, 589, 837, 1050
Bme1390I CCNGG 4 cut(s) 156, 464, 1165, 1212
Bme18I GGWCC 2 cut(s) 148, 158
BmgBI CACGTC 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 148, 158
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 4 cut(s) 156, 464, 1165, 1212
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 7 cut(s) 200, 219, 568, 767, 822, 892, 1000
BmuI ACTGGG 1 cut(s) 820
Bpu1102I GCTNAGC 1 cut(s) 634
Bpu14I TTCGAA 2 cut(s) 311, 520
BpuEI CTTGAG 2 cut(s) 342, 770
BsaAI YACGTR 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 4 cut(s) 72, 411, 669, 1163
BsaWI WCCGGW 1 cut(s) 818
Bsc4I CCNNNNNNNGG 2 cut(s) 659, 703
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 3 cut(s) 327, 645, 815
Bse3DI GCAATG 2 cut(s) 542, 1043
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 4 cut(s) 156, 464, 1165, 1212
BseDI CCNNGG 4 cut(s) 72, 411, 669, 1163
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 659, 703
BseMI GCAATG 2 cut(s) 542, 1043
BseNI ACTGG 3 cut(s) 327, 645, 815
BseRI GAGGAG 2 cut(s) 290, 815
BseXI GCAGC 5 cut(s) 568, 574, 596, 822, 1060
BseYI CCCAGC 2 cut(s) 838, 1028
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 3 cut(s) 154, 467, 1210
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 2 cut(s) 151, 819
BslFI GGGAC 2 cut(s) 383, 469
BslI CCNNNNNNNGG 2 cut(s) 659, 703
BsmAI GTCTC 2 cut(s) 335, 360
BsmFI GGGAC 2 cut(s) 383, 469
BsnI GGCC 3 cut(s) 154, 467, 1210
Bsp119I TTCGAA 2 cut(s) 311, 520
Bsp1286I GDGCHC 2 cut(s) 653, 771
Bsp143I GATC 3 cut(s) 10, 723, 1219
Bsp1720I GCTNAGC 1 cut(s) 634
Bsp68I TCGCGA 1 cut(s) 690
BspACI CCGC 1 cut(s) 718
BspANI GGCC 3 cut(s) 154, 467, 1210
BspFNI CGCG 1 cut(s) 690
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 2 cut(s) 586, 1189
BspPI GGATC 1 cut(s) 731
BspT104I TTCGAA 2 cut(s) 311, 520
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 2 cut(s) 542, 1043
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 3 cut(s) 327, 645, 815
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 72, 411, 669, 1163
BssMI GATC 3 cut(s) 10, 723, 1219
BssT1I CCWWGG 2 cut(s) 72, 669
Bst2UI CCWGG 4 cut(s) 156, 464, 1165, 1212
Bst4CI ACNGT 9 cut(s) 136, 222, 376, 412, 420, 559, 928, 955, 1003
Bst6I CTCTTC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 201
BstBI TTCGAA 2 cut(s) 311, 520
BstC8I GCNNGC 4 cut(s) 324, 537, 631, 746
BstDEI CTNAG 3 cut(s) 634, 1177, 1223
BstDSI CCRYGG 1 cut(s) 411
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 690
BstKTI GATC 3 cut(s) 13, 726, 1222
BstMAI GTCTC 2 cut(s) 335, 360
BstMBI GATC 3 cut(s) 10, 723, 1219
BstMWI GCNNNNNNNGC 5 cut(s) 473, 570, 587, 635, 832
BstNI CCWGG 4 cut(s) 156, 464, 1165, 1212
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 4 cut(s) 154, 462, 1163, 1210
BstSFI CTRYAG 3 cut(s) 438, 582, 1185
BstSNI TACGTA 1 cut(s) 201
BstUI CGCG 1 cut(s) 690
BstV1I GCAGC 5 cut(s) 568, 574, 596, 822, 1060
BsuI GTATCC 3 cut(s) 190, 210, 916
BsuRI GGCC 3 cut(s) 154, 467, 1210
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 483
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 564, 638, 951
BtuMI TCGCGA 1 cut(s) 690
Cac8I GCNNGC 4 cut(s) 324, 537, 631, 746
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 148, 158
Csp6I GTAC 3 cut(s) 82, 644, 1172
CviAII CATG 3 cut(s) 727, 777, 1054
CviQI GTAC 3 cut(s) 82, 644, 1172
DdeI CTNAG 3 cut(s) 634, 1177, 1223
DpnI GATC 3 cut(s) 12, 725, 1221
DpnII GATC 3 cut(s) 10, 723, 1219
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco105I TACGTA 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 72, 669
Eco147I AGGCCT 2 cut(s) 467, 1210
Eco24I GRGCYC 1 cut(s) 653
Eco47I GGWCC 2 cut(s) 148, 158
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 4 cut(s) 154, 462, 1163, 1210
EcoT14I CCWWGG 2 cut(s) 72, 669
EcoT22I ATGCAT 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 2 cut(s) 72, 669
FaeI CATG 3 cut(s) 730, 780, 1057
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 2 cut(s) 383, 469
FatI CATG 3 cut(s) 726, 776, 1053
FauI CCCGC 1 cut(s) 725
Fnu4HI GCNGC 5 cut(s) 582, 585, 588, 836, 1049
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 5 cut(s) 582, 585, 588, 836, 1049
GluI GCNGC 5 cut(s) 582, 585, 588, 836, 1049
GsaI CCCAGC 2 cut(s) 842, 1032
HaeIII GGCC 3 cut(s) 154, 467, 1210
HapII CCGG 2 cut(s) 151, 819
Hin1II CATG 3 cut(s) 730, 780, 1057
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 5 cut(s) 53, 163, 208, 815, 1087
HpaII CCGG 2 cut(s) 151, 819
HphI GGTGA 2 cut(s) 70, 79
Hpy166II GTNNAC 5 cut(s) 141, 212, 706, 1174, 1229
Hpy188I TCNGA 6 cut(s) 162, 175, 196, 207, 679, 1009
Hpy188III TCNNGA 5 cut(s) 17, 359, 398, 689, 914
Hpy8I GTNNAC 5 cut(s) 141, 212, 706, 1174, 1229
HpyAV CCTTC 2 cut(s) 1097, 1282
HpyCH4III ACNGT 9 cut(s) 136, 222, 376, 412, 420, 559, 928, 955, 1003
HpyCH4IV ACGT 2 cut(s) 200, 482
HpyCH4V TGCA 9 cut(s) 232, 547, 584, 744, 776, 883, 1013, 1048, 1187
HpyF10VI GCNNNNNNNGC 5 cut(s) 473, 570, 587, 635, 832
HpyF3I CTNAG 3 cut(s) 634, 1177, 1223
HpySE526I ACGT 2 cut(s) 200, 482
Hsp92II CATG 3 cut(s) 730, 780, 1057
Kzo9I GATC 3 cut(s) 10, 723, 1219
LmnI GCTCC 2 cut(s) 1122, 1190
Lsp1109I GCAGC 5 cut(s) 568, 574, 596, 822, 1060
LweI GCATC 7 cut(s) 200, 219, 568, 767, 822, 892, 1000
MaeII ACGT 2 cut(s) 200, 482
MaeIII GTNAC 2 cut(s) 67, 932
MalI GATC 3 cut(s) 12, 725, 1221
MboI GATC 3 cut(s) 10, 723, 1219
MboII GAAGA 8 cut(s) 5, 103, 106, 325, 534, 677, 722, 963
MhlI GDGCHC 2 cut(s) 653, 771
MluCI AATT 9 cut(s) 289, 307, 511, 551, 699, 750, 897, 1070, 1259
MlyI GAGTC 2 cut(s) 47, 217
MmeI TCCRAC 3 cut(s) 144, 431, 480
MnlI CCTC 7 cut(s) 245, 255, 268, 478, 563, 793, 1245
Mph1103I ATGCAT 1 cut(s) 778
MseI TTAA 7 cut(s) 258, 288, 333, 737, 753, 1113, 1250
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 2 cut(s) 151, 819
MspR9I CCNGG 4 cut(s) 156, 464, 1165, 1212
MvaI CCWGG 4 cut(s) 156, 464, 1165, 1212
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 5 cut(s) 473, 570, 587, 635, 832
NdeII GATC 3 cut(s) 10, 723, 1219
NlaIII CATG 3 cut(s) 730, 780, 1057
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 67
NruI TCGCGA 1 cut(s) 690
NsiI ATGCAT 1 cut(s) 778
NspV TTCGAA 2 cut(s) 311, 520
PceI AGGCCT 2 cut(s) 467, 1210
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 910
PfeI GAWTC 3 cut(s) 163, 815, 1087
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 5 cut(s) 583, 586, 589, 837, 1050
PleI GAGTC 2 cut(s) 47, 216
PpsI GAGTC 2 cut(s) 47, 216
Ppu21I YACGTR 1 cut(s) 201
Psp6I CCWGG 4 cut(s) 154, 462, 1163, 1210
PspEI GGTNACC 1 cut(s) 67
PspFI CCCAGC 2 cut(s) 838, 1028
PspGI CCWGG 4 cut(s) 154, 462, 1163, 1210
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 2 cut(s) 148, 158
PstI CTGCAG 2 cut(s) 586, 1189
PvuII CAGCTG 1 cut(s) 587
RruI TCGCGA 1 cut(s) 690
RsaI GTAC 3 cut(s) 83, 645, 1173
RsaNI GTAC 3 cut(s) 82, 644, 1172
SaqAI TTAA 7 cut(s) 258, 288, 333, 737, 753, 1113, 1250
SatI GCNGC 5 cut(s) 582, 585, 588, 836, 1049
Sau3AI GATC 3 cut(s) 10, 723, 1219
Sau96I GGNCC 2 cut(s) 148, 158
SchI GAGTC 2 cut(s) 47, 217
ScrFI CCNGG 4 cut(s) 156, 464, 1165, 1212
SduI GDGCHC 2 cut(s) 653, 771
SfaNI GCATC 7 cut(s) 200, 219, 568, 767, 822, 892, 1000
SfcI CTRYAG 3 cut(s) 438, 582, 1185
SfuI TTCGAA 2 cut(s) 311, 520
SinI GGWCC 2 cut(s) 148, 158
SmlI CTYRAG 2 cut(s) 357, 785
SmoI CTYRAG 2 cut(s) 357, 785
SnaBI TACGTA 1 cut(s) 201
Sse9I AATT 9 cut(s) 289, 307, 511, 551, 699, 750, 897, 1070, 1259
SseBI AGGCCT 2 cut(s) 467, 1210
SsiI CCGC 1 cut(s) 718
SspI AATATT 1 cut(s) 1036
StuI AGGCCT 2 cut(s) 467, 1210
StyD4I CCNGG 4 cut(s) 154, 462, 1163, 1210
StyI CCWWGG 2 cut(s) 72, 669
TaaI ACNGT 9 cut(s) 136, 222, 376, 412, 420, 559, 928, 955, 1003
TaiI ACGT 2 cut(s) 203, 485
TaqI TCGA 2 cut(s) 311, 520
TasI AATT 9 cut(s) 289, 307, 511, 551, 699, 750, 897, 1070, 1259
TfiI GAWTC 3 cut(s) 163, 815, 1087
Tru1I TTAA 7 cut(s) 258, 288, 333, 737, 753, 1113, 1250
Tru9I TTAA 7 cut(s) 258, 288, 333, 737, 753, 1113, 1250
TscAI CASTG 3 cut(s) 564, 645, 958
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 5 cut(s) 581, 584, 587, 835, 1048
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 30, 860, 1284
TspGWI ACGGA 2 cut(s) 229, 249
TspRI CASTG 3 cut(s) 564, 645, 958
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 2 cut(s) 148, 158
XapI RAATTY 4 cut(s) 307, 511, 551, 1070
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.