Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4330152 .. 4333130

Gene Structure 2979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G062700.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTTGTCATCCTCCGGAAGGTCAAGGTGCGTTTTGTCCAGAAATTCTTCTGTTTTTCTCGTTTCATGTTTTTAGTGGTTTGGCCATGGTTTCTAATAAGAAGCCCCCAACGGAGCCCCCAGCGGAGTGATGTGGATAATCCTATGAACAATTTGCATGGTAGGAGAGGGCGAACTCCTATTTCAGGAAGAGGGCATCAAACAATTCCTCTGCACCACAGAACCCCCAGCTACTCACCTCCTCGTAGATCTCGTATGTACTCTAATCATCGGAGGCATTATAGTCGATCACCTAGTTATTCATCTGACCTAAGCAGGAGAAGTCGGCTGCCCAAAACATACTGTGCTCAGTGCAATCGGTATAGACCTTACTCTTACAGCAGGTCACCAGTGAGACACCGTTACCTGGCCGACTCACCATATGACTCCAGAGGGTATTCACCAGATGATTCTTACCACGTAAGAAGGTATCGCCATGGAAGGCAGTCTCCCAGTCCACTTGGGGCAAGGAGAAGGTCAAGGAGGAGCTACTCGCATAGTGTCTCTCCTAGGCCTAGGAGGAGTTACAGGAGGAACTACCCCAGACTTTCTCCTGAACCAGAAAGGAGGACGGTGAAAAATGGCACCCCGTGTCAAAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006325 GO:0006396 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043484 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

215

Amino Acids

25.77

Weight (kDa)

11.66

Isoelectric Point (pI)

104.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	623
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	1 cut(s)	124
AcoI	YGGCCR	2 cut(s)	83, 408
AcsI	RAATTY	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	630
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	19, 185, 406
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	231, 528
AluI	AGCT	2 cut(s)	231, 528
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	388, 492, 547
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	3 cut(s)	83, 408, 551
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	47
AspA2I	CCTAGG	2 cut(s)	548, 554
AsuHPI	GGTGA	6 cut(s)	228, 282, 378, 408, 432, 625
AvrII	CCTAGG	2 cut(s)	548, 554
BalI	TGGCCA	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	3 cut(s)	388, 492, 547
BfaI	CTAG	3 cut(s)	294, 549, 555
BfuAI	ACCTGC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	1 cut(s)	329
BlnI	CCTAGG	2 cut(s)	548, 554
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	116, 625
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	460
BsaJI	CCNNGG	4 cut(s)	86, 475, 548, 554
BsaWI	WCCGGW	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 185, 406
Bse1I	ACTGG	3 cut(s)	389, 492, 640
BseAI	TCCGGA	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	4 cut(s)	86, 475, 548, 554
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	19, 185, 406
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	389, 492, 640
BseRI	GAGGAG	3 cut(s)	231, 538, 574
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	2 cut(s)	120, 227
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	3 cut(s)	85, 410, 553
BshNI	GGYRCC	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	19, 185, 406
BsmAI	GTCTC	3 cut(s)	388, 492, 547
BsnI	GGCC	3 cut(s)	85, 410, 553
Bsp1286I	GDGCHC	2 cut(s)	119, 349
Bsp13I	TCCGGA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	248, 287
Bsp19I	CCATGG	2 cut(s)	86, 475
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	3 cut(s)	85, 410, 553
BspCNI	CTCAG	1 cut(s)	361
BspEI	TCCGGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	116, 625
BspMI	ACCTGC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	389, 492, 640
BssECI	CCNNGG	4 cut(s)	86, 475, 548, 554
BssMI	GATC	2 cut(s)	248, 287
BssT1I	CCWWGG	4 cut(s)	86, 475, 548, 554
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	344, 401, 613
Bst6I	CTCTTC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	311, 348
BstDSI	CCRYGG	2 cut(s)	86, 475
BstEII	GGTNACC	1 cut(s)	384
BstENI	CCTNNNNNAGG	2 cut(s)	17, 183
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	251, 290
BstMAI	GTCTC	3 cut(s)	388, 492, 547
BstMBI	GATC	2 cut(s)	248, 287
BstNI	CCWGG	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	3 cut(s)	85, 410, 553
BtgI	CCRYGG	2 cut(s)	86, 475
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	356, 396
BveI	ACCTGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	4 cut(s)	67, 87, 158, 476
CviJI	RGCY	8 cut(s)	85, 105, 117, 231, 328, 410, 528, 553
CviKI_1	RGCY	8 cut(s)	85, 105, 117, 231, 328, 410, 528, 553
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	311, 348
DpnI	GATC	2 cut(s)	250, 289
DpnII	GATC	2 cut(s)	248, 287
DraIII	CACNNNGTG	1 cut(s)	630
EaeI	YGGCCR	2 cut(s)	83, 408
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	4 cut(s)	86, 475, 548, 554
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	384
EcoNI	CCTNNNNNAGG	2 cut(s)	17, 183
EcoO65I	GGTNACC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	4 cut(s)	86, 475, 548, 554
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	4 cut(s)	86, 475, 548, 554
FaeI	CATG	4 cut(s)	70, 90, 161, 479
FatI	CATG	4 cut(s)	66, 86, 157, 475
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	3 cut(s)	294, 549, 555
GluI	GCNGC	1 cut(s)	329
GsaI	CCCAGC	2 cut(s)	124, 231
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	3 cut(s)	85, 410, 553
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	4 cut(s)	70, 90, 161, 479
HinfI	GANTC	3 cut(s)	413, 425, 449
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	6 cut(s)	228, 282, 378, 408, 432, 625
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	2 cut(s)	273, 307
Hpy188III	TCNNGA	5 cut(s)	16, 40, 186, 429, 593
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	4 cut(s)	13, 459, 474, 507
HpyCH4III	ACNGT	3 cut(s)	344, 401, 613
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	157, 214, 354
HpyF3I	CTNAG	2 cut(s)	311, 348
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	70, 90, 161, 479
Kpn2I	TCCGGA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	248, 287
LmnI	GCTCC	2 cut(s)	114, 525
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	3 cut(s)	294, 549, 555
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	3 cut(s)	384, 401, 563
MalI	GATC	2 cut(s)	250, 289
MboI	GATC	2 cut(s)	248, 287
MboII	GAAGA	2 cut(s)	40, 201
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	119, 349
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	3 cut(s)	44, 151, 204
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	407, 419
Mox20I	TGGCCA	1 cut(s)	85
MroI	TCCGGA	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	85
Msp20I	TGGCCA	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
NcoI	CCATGG	2 cut(s)	86, 475
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	2 cut(s)	248, 287
NlaIII	CATG	4 cut(s)	70, 90, 161, 479
NlaIV	GGNNCC	2 cut(s)	116, 625
NmuCI	GTSAC	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	2 cut(s)	407, 419
PpsI	GAGTC	2 cut(s)	407, 419
Ppu21I	YACGTR	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	405
PspEI	GGTNACC	1 cut(s)	384
PspFI	CCCAGC	2 cut(s)	120, 227
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	116, 625
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	2 cut(s)	248, 287
SchI	GAGTC	2 cut(s)	407, 419
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	119, 349
SfaNI	GCATC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	44, 151, 204
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	3 cut(s)	294, 549, 555
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	4 cut(s)	86, 475, 548, 554
TaaI	ACNGT	3 cut(s)	344, 401, 613
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	286
TasI	AATT	3 cut(s)	44, 151, 204
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	449
TscAI	CASTG	2 cut(s)	356, 396
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	3 cut(s)	55, 161, 291
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	356, 396
XagI	CCTNNNNNAGG	2 cut(s)	17, 183
XapI	RAATTY	1 cut(s)	44
XmaJI	CCTAGG	2 cut(s)	548, 554
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	3 cut(s)	294, 549, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.