Prupe.6G069300_v2.0.a1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
4760795 .. 4762499
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G069300.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 714 bp
ATGTTCAAAAATCTCCCTTTCGGATTGCTTGGTAGTTCTGCTCTTATACTTATATGGTTCATTCACAATTTGATCACAGGCATTGACTACATTTCAGATGCAGCCTTCATATCCACTGGTGTAAGCAAAAGCATAGCCCCTCATTACAAAGCTACTCATCAAAAGCAAGCAGCCTATGTCAGGAGTTTTCCTAGTGGGGTCAATAACTGTTACAGAGTAAACATCATAAAGGGCACTAAATATTTGATCCGAACAATGGAATTTGTTGATGCATCTTTAAGTACTAACAAAGAACTTGTTTATGTTCCCACCTTTGACTATATACATGTCTGTCTAGTCAACAAAGGCTCTGGAACACCATTCATATCAGCATTGGAGTCAAGGCCTTTGAAAACCATTACTTATTTGAGTCCAACAGCTCCGCAGGCACTCTTCCTTCGCTCAGATGTCGTTATGAGTACTGCCAGTGCCAGCACATCAACAAATGATAATGCTTCCATGGACTTTGGCTGGGAAGCCCCGGATACAACTACTGGATATAATGTGTACCTGCACTTTGCGGAACTCCAGATTTGTCACGACCAGAAACATATGATAGTGGATGCCATGACGAACATTAAGTCCACATATGGAGTACTGGAGACAGATTGGGAGGGAGACCCATGTACTCCTCAAGAATATGTTTGGGAAGGAATCTTTCTTCGAGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

238

Amino Acids

26.42

Weight (kDa)

5.77

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AciI CCGC 2 cut(s) 422, 560
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 5 cut(s) 283, 460, 548, 636, 667
AfiI CCNNNNNNNGG 2 cut(s) 180, 256
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 2 cut(s) 7, 391
AloI GAACNNNNNNTCC 2 cut(s) 605, 637
AluBI AGCT 2 cut(s) 152, 419
AluI AGCT 2 cut(s) 152, 419
Alw26I GTCTC 2 cut(s) 635, 651
AlwI GGATC 1 cut(s) 241
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 101, 170
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AsuC2I CCSGG 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 113, 182
BciVI GTATCC 1 cut(s) 517
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 2 cut(s) 635, 651
BfaI CTAG 2 cut(s) 192, 335
BfuAI ACCTGC 1 cut(s) 558
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 2 cut(s) 102, 171
BlsI GCNGC 2 cut(s) 103, 172
BmcAI AGTACT 3 cut(s) 283, 460, 636
Bme1390I CCNGG 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 4 cut(s) 88, 259, 281, 592
BpmI CTGGAG 2 cut(s) 551, 659
BpuEI CTTGAG 1 cut(s) 657
BpuMI CCSGG 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 498, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 256
Bse1I ACTGG 4 cut(s) 121, 465, 538, 642
BseDI CCNNGG 2 cut(s) 498, 519
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 180, 256
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 4 cut(s) 121, 465, 538, 642
BseRI GAGGAG 1 cut(s) 660
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 2 cut(s) 113, 182
BseYI CCCAGC 1 cut(s) 510
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 180, 256
BsmAI GTCTC 2 cut(s) 635, 651
BsnI GGCC 1 cut(s) 385
Bso31I GGTCTC 1 cut(s) 651
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 72, 246
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 2 cut(s) 422, 560
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 1 cut(s) 455
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 651
BsrI ACTGG 4 cut(s) 121, 465, 538, 642
BssECI CCNNGG 2 cut(s) 498, 519
BssMI GATC 2 cut(s) 72, 246
BssT1I CCWWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 168, 426, 472
BstDEI CTNAG 1 cut(s) 442
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 2 cut(s) 75, 249
BstMAI GTCTC 2 cut(s) 635, 651
BstMBI GATC 2 cut(s) 72, 246
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 113, 182
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 1 cut(s) 385
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 114, 472
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 3 cut(s) 168, 426, 472
Csp6I GTAC 5 cut(s) 282, 459, 547, 635, 666
CviAII CATG 4 cut(s) 326, 499, 607, 663
CviJI RGCY 9 cut(s) 104, 137, 152, 173, 348, 385, 419, 510, 518
CviKI_1 RGCY 9 cut(s) 104, 137, 152, 173, 348, 385, 419, 510, 518
CviQI GTAC 5 cut(s) 282, 459, 547, 635, 666
DdeI CTNAG 1 cut(s) 442
DpnI GATC 2 cut(s) 74, 248
DpnII GATC 2 cut(s) 72, 246
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 498
Eco147I AGGCCT 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 651
EcoNI CCTNNNNNAGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 329, 502, 610, 666
FatI CATG 4 cut(s) 325, 498, 606, 662
FauNDI CATATG 2 cut(s) 591, 628
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 102, 171
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 2 cut(s) 102, 171
FspBI CTAG 2 cut(s) 192, 335
GluI GCNGC 2 cut(s) 102, 171
GsaI CCCAGC 1 cut(s) 514
GsuI CTGGAG 2 cut(s) 551, 659
HaeIII GGCC 1 cut(s) 385
HapII CCGG 1 cut(s) 521
Hin1II CATG 4 cut(s) 329, 502, 610, 666
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 3 cut(s) 377, 409, 693
HpaII CCGG 1 cut(s) 521
Hpy166II GTNNAC 4 cut(s) 220, 340, 547, 624
Hpy188I TCNGA 4 cut(s) 23, 97, 251, 445
Hpy188III TCNNGA 5 cut(s) 181, 351, 568, 578, 674
Hpy8I GTNNAC 4 cut(s) 220, 340, 547, 624
HpyAV CCTTC 3 cut(s) 115, 446, 683
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 101, 272, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 1 cut(s) 442
Hsp92II CATG 4 cut(s) 329, 502, 610, 666
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 72, 246
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 2 cut(s) 113, 182
LweI GCATC 4 cut(s) 88, 259, 281, 592
MaeI CTAG 2 cut(s) 192, 335
MaeIII GTNAC 2 cut(s) 209, 575
MalI GATC 2 cut(s) 74, 248
MboI GATC 2 cut(s) 72, 246
MboII GAAGA 2 cut(s) 424, 692
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 2 cut(s) 67, 260
MlyI GAGTC 2 cut(s) 386, 418
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 3 cut(s) 150, 646, 681
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 2 cut(s) 278, 618
MspI CCGG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 425
NciI CCSGG 1 cut(s) 521
NcoI CCATGG 1 cut(s) 498
NdeI CATATG 2 cut(s) 591, 628
NdeII GATC 2 cut(s) 72, 246
NlaIII CATG 4 cut(s) 329, 502, 610, 666
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 329
PceI AGGCCT 1 cut(s) 385
PciI ACATGT 1 cut(s) 325
PfeI GAWTC 1 cut(s) 693
PkrI GCNGC 2 cut(s) 103, 172
PleI GAGTC 2 cut(s) 385, 417
PpsI GAGTC 2 cut(s) 385, 417
PscI ACATGT 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 510
RsaI GTAC 5 cut(s) 283, 460, 548, 636, 667
RsaNI GTAC 5 cut(s) 282, 459, 547, 635, 666
SaqAI TTAA 2 cut(s) 278, 618
SatI GCNGC 2 cut(s) 102, 171
Sau3AI GATC 2 cut(s) 72, 246
ScaI AGTACT 3 cut(s) 283, 460, 636
SchI GAGTC 2 cut(s) 386, 418
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 236
SetI ASST 4 cut(s) 154, 314, 421, 552
SfaNI GCATC 4 cut(s) 88, 259, 281, 592
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 2 cut(s) 67, 260
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 2 cut(s) 422, 560
SspI AATATT 1 cut(s) 242
SspMI CTAG 2 cut(s) 192, 335
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 1 cut(s) 519
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 703
TasI AATT 2 cut(s) 67, 260
TatI WGTACW 4 cut(s) 281, 458, 634, 665
TfiI GAWTC 1 cut(s) 693
Tru1I TTAA 2 cut(s) 278, 618
Tru9I TTAA 2 cut(s) 278, 618
TscAI CASTG 2 cut(s) 121, 472
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 101, 170
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 3 cut(s) 49, 97, 352
TspRI CASTG 2 cut(s) 121, 472
XagI CCTNNNNNAGG 1 cut(s) 178
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 329
XspI CTAG 2 cut(s) 192, 335
ZrmI AGTACT 3 cut(s) 283, 460, 636
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.