Prupe.6G076500_v2.0.a1

Triosephosphate isomerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
5252452 .. 5254262
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G076500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 645 bp
ATGGACAGAAAACTCTTCGTCGGTGGCAACTGGAAATGCAATGGAAGAACTGCAGAGGTGAAGAAGATTGTCACCACTCTGAATGAAGCTGAACTCCCTTCAGAAGATATTGTGGAGGTTGTTGAGAGCCCTCCATTTGTGTTTCTTGCTTTTGTGAAAAGTTTATTGTGGTCTGATTTCCATGTTGTGTCACAGAACTGTTGGGTTCGCAAAGGTAGTGCTTTTACGGAGAGGTTAGTTTCTTGTTTGCTCGGTGCGGAGATGCTGGTGAATTTGGGCATTCCGTGGGTCATTGTTGGTCATTCTGAAAGAAGACTTGTTCTAAATGAGTCCAATGAGGTAACAACACTTTCTCAAGGCTTAAAAGTTATTGCTTGTGTTGGGGAGACTCTTGAGCAACGAGAAACAGGATCGACAGTGGCTGTTGTTGCTGCACAAACAAAAGCAATCGCAGTATCAAGCTGGGAGAACATTGTTTTGGCTTATGAACCAATTTGGGCAATTGGAACTCGGAAGGTTGCAAGCCCTGCTCAGACTCAGGAACCGGAGTTCATCGACATTATCAAGTCAGCTAGAGTAGTGAAGAAGAATGTCCGCTTGGAAACAAAGTTGGATTTAATATGCAACATTTATATACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004807 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006071 GO:0006081 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019400 GO:0019405 GO:0019438 GO:0019439 GO:0019563 GO:0019637 GO:0019682 GO:0019693 GO:0019751 GO:0019752 GO:0030054 GO:0030312 GO:0031090 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044275 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046164 GO:0046166 GO:0046174 GO:0046184 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046914 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901616
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

23.74

Weight (kDa)

6.19

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 257, 595
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 4 cut(s) 461, 493, 581, 613
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 3 cut(s) 89, 462, 572
AluI AGCT 3 cut(s) 89, 462, 572
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 64, 70, 280
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
BmiI GGNNCC 1 cut(s) 543
BmsI GCATC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 319
BpuEI CTTGAG 2 cut(s) 339, 413
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 545, 551
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 418
BseYI CCCAGC 1 cut(s) 462
BsgI GTGCAG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 410
BspACI CCGC 2 cut(s) 257, 595
BspCNI CTCAG 2 cut(s) 544, 550
BspLI GGNNCC 1 cut(s) 543
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 200, 418
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 531, 537
BstDSI CCRYGG 1 cut(s) 284
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 2 cut(s) 428, 527
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 523
CaiI CAGNNNCTG 1 cut(s) 422
CviAII CATG 1 cut(s) 182
CviJI RGCY 8 cut(s) 89, 129, 360, 422, 462, 482, 525, 572
CviKI_1 RGCY 8 cut(s) 89, 129, 360, 422, 462, 482, 525, 572
DdeI CTNAG 2 cut(s) 531, 537
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 185
FaiI YATR 5 cut(s) 183, 486, 622, 633, 635
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 432
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 573
GluI GCNGC 1 cut(s) 432
GsaI CCCAGC 1 cut(s) 466
HapII CCGG 1 cut(s) 545
Hin1II CATG 1 cut(s) 185
HinfI GANTC 3 cut(s) 329, 388, 535
HpaII CCGG 1 cut(s) 545
HphI GGTGA 3 cut(s) 64, 70, 280
Hpy188I TCNGA 6 cut(s) 81, 103, 175, 307, 513, 534
Hpy188III TCNNGA 2 cut(s) 392, 539
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 108, 508
HpyCH4III ACNGT 2 cut(s) 200, 418
HpyCH4V TGCA 5 cut(s) 39, 53, 434, 521, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 527
HpyF3I CTNAG 2 cut(s) 531, 537
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 410
LpnPI CCDG 7 cut(s) 16, 251, 393, 448, 524, 540, 558
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 70, 189, 340
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 8 cut(s) 7, 57, 73, 76, 116, 324, 595, 598
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 3 cut(s) 271, 492, 501
MlyI GAGTC 3 cut(s) 338, 382, 529
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 5 cut(s) 49, 109, 141, 225, 331
MseI TTAA 2 cut(s) 362, 617
MspI CCGG 1 cut(s) 545
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 428, 527
NdeII GATC 1 cut(s) 410
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 543
NmuCI GTSAC 2 cut(s) 70, 189
PctI GAATGC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 3 cut(s) 337, 382, 529
PpsI GAGTC 3 cut(s) 337, 382, 529
PspFI CCCAGC 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 543
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 422
SaqAI TTAA 2 cut(s) 362, 617
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 1 cut(s) 410
SchI GAGTC 3 cut(s) 338, 382, 529
SduI GDGCHC 1 cut(s) 131
SetI ASST 9 cut(s) 60, 91, 120, 217, 236, 342, 464, 519, 574
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 354, 392
SmoI CTYRAG 2 cut(s) 354, 392
Sse9I AATT 3 cut(s) 271, 492, 501
SsiI CCGC 2 cut(s) 257, 595
SspMI CTAG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 200, 418
TaqI TCGA 2 cut(s) 413, 555
TasI AATT 3 cut(s) 271, 492, 501
Tru1I TTAA 2 cut(s) 362, 617
Tru9I TTAA 2 cut(s) 362, 617
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 2 cut(s) 70, 189
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 2 cut(s) 70, 189
TspDTI ATGAA 3 cut(s) 99, 501, 541
TspGWI ACGGA 2 cut(s) 242, 273
TspRI CASTG 1 cut(s) 423
XapI RAATTY 1 cut(s) 271
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.