Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6248472 .. 6249680

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G091200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGGTTTAGTTTATCTGTATTGGGAAAATTCTTCAAACTTGGTCTTGAACCAGATGTCTTTACCTTCACCACTCTAATCAACGGCTTTCTTCTCAAGAATAGAATGGCGGAGGCGGCAGGAATTTTCAACAAAATGATTGCGGGAGGTAATTGTCAGCCTGATGTGATTACTTATGGCACACTAGTAAAGGCCTTTTGCATGAAAGGTAACAATAGTGCTGCTATTCAGTTGCTTAGGAAGATGGAGGAAGGAGCTTGCAAGCCTGACCTAGTTGTCTATAGCACAATCATCGACAGTCTTTGTAAGGATACACTAGTGGATGATGCATTTAACCTCTTCTCAGAAATGATAAGCAAGGGTATTGCCCCAAATGCCATTACCTATACATCCTTGATTCATGGAATTTGCAAATTAGGCGAGTGGAAAGAAGCTACAAGGTTGTTGAATGACATGGTGAGTAAAAACATCTTTCCAGATGTGTTCACATTCAGCATCTTGGTAGACACAATTTGTAAGGAGGGGATGGTCGTGGAGGCAGAAGGTGTGGTTGAAATGATGATTCAAAGAGGTATTGAACTAATGCTTAGCAAGGGCTCCATGGTTAATGTTGTTAGTTACAGCACATTGATAAATGGATATTGTAAGCATAGAAAAATAGATGAGGCCATGATGCTTTTTCTGGATATGTCTCATAAGGGACTGGTTCCAAATACCATTACTTATAACACTCTTCTGGACGGCTTTTGCAAAACAGGCAGAATACAGGACGCACAAAAGTTGTTCTCTAAGATGCAAGCTTGTGGCCAACTTCCTGATGCTCAAACTTATTCTATTTTACTGGATGGCCTGTGTAAAAACCGACAACTTTCTAGGGCAATGCAATTGTTTTGTGAGATGGAAGCGAAGAAGTTGGATATTGATATTGTGATTTACAATATTCTTCTTGAAGGTTTGTTTATAACTGGAAAAATTGAATCTGCTAGGGATCTCTTTTGTGGTTTATCACCAAAAGGACTTCGACCTAATGTGAGGACATACACTATAATGATTAATGGACTCTGTATCGGAGGCCTAACAAGTGAAGCGGAAAATTTGCTGGTTGAAATGGAAGGGAAAGGCTGTTATCCAGATGGTTGCACATATAACACAATTATCAGAGGGCTTATCAGGAACAAAGAGACATCAAGGGCGATGGTACTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

403

Amino Acids

44.48

Weight (kDa)

6.81

Isoelectric Point (pI)

23.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	726, 962
AasI	GACNNNNNNGTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	4 cut(s)	110, 116, 143, 1088
AclWI	GGATC	1 cut(s)	996
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	4 cut(s)	29, 123, 405, 1093
AfaI	GTAC	1 cut(s)	1200
AhlI	ACTAGT	2 cut(s)	184, 316
AluBI	AGCT	3 cut(s)	257, 434, 800
AluI	AGCT	3 cut(s)	257, 434, 800
Alw26I	GTCTC	2 cut(s)	696, 1175
AlwI	GGATC	1 cut(s)	996
AoxI	GGCC	5 cut(s)	192, 666, 805, 847, 1072
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	4 cut(s)	29, 123, 405, 1093
AseI	ATTAAT	1 cut(s)	1053
AsuHPI	GGTGA	3 cut(s)	61, 469, 999
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BalI	TGGCCA	1 cut(s)	807
BanII	GRGCYC	1 cut(s)	599
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	6 cut(s)	238, 520, 839, 892, 1127, 1189
BceAI	ACGGC	2 cut(s)	100, 757
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciVI	GTATCC	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	696, 1175
BcuI	ACTAGT	2 cut(s)	184, 316
BfaI	CTAG	5 cut(s)	185, 272, 317, 873, 984
BfmI	CTRYAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	117, 222
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	2 cut(s)	118, 223
BmiI	GGNNCC	2 cut(s)	598, 708
BmsI	GCATC	5 cut(s)	316, 504, 663, 783, 808
Bpu10I	CCTNAGC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	600
Bse1I	ACTGG	3 cut(s)	708, 846, 970
Bse3DI	GCAATG	1 cut(s)	885
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	4 cut(s)	328, 389, 531, 850
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	708, 846, 970
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	5 cut(s)	194, 668, 807, 849, 1074
BslFI	GGGAC	1 cut(s)	714
BsmAI	GTCTC	2 cut(s)	696, 1175
BsmFI	GGGAC	1 cut(s)	714
BsnI	GGCC	5 cut(s)	194, 668, 807, 849, 1074
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	988
Bsp1720I	GCTNAGC	1 cut(s)	587
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	4 cut(s)	110, 116, 143, 1088
BspANI	GGCC	5 cut(s)	194, 668, 807, 849, 1074
BspCNI	CTCAG	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	598, 708
BspPI	GGATC	1 cut(s)	996
BsrDI	GCAATG	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	708, 846, 970
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	1 cut(s)	988
BssT1I	CCWWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	344, 738
BstC8I	GCNNGC	3 cut(s)	259, 263, 798
BstDEI	CTNAG	4 cut(s)	236, 343, 587, 789
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	4 cut(s)	328, 389, 531, 850
BstKTI	GATC	1 cut(s)	991
BstMAI	GTCTC	2 cut(s)	696, 1175
BstMBI	GATC	1 cut(s)	988
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 374, 417, 756
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	5 cut(s)	194, 668, 807, 849, 1074
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	4 cut(s)	328, 389, 531, 850
Cac8I	GCNNGC	3 cut(s)	259, 263, 798
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	1199
CviAII	CATG	5 cut(s)	202, 401, 454, 601, 670
CviQI	GTAC	1 cut(s)	1199
DdeI	CTNAG	4 cut(s)	236, 343, 587, 789
DpnI	GATC	1 cut(s)	990
DpnII	GATC	1 cut(s)	988
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	344, 738
EarI	CTCTTC	2 cut(s)	344, 738
EciI	GGCGGA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	600
Eco147I	AGGCCT	2 cut(s)	194, 1074
Eco24I	GRGCYC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	5 cut(s)	205, 404, 457, 604, 673
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	5 cut(s)	201, 400, 453, 600, 669
FauI	CCCGC	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	117, 222
FokI	GGATG	4 cut(s)	335, 376, 538, 857
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	2 cut(s)	117, 222
FspBI	CTAG	5 cut(s)	185, 272, 317, 873, 984
GluI	GCNGC	2 cut(s)	117, 222
HaeIII	GGCC	5 cut(s)	194, 668, 807, 849, 1074
HgaI	GACGC	1 cut(s)	779
Hin1II	CATG	5 cut(s)	205, 404, 457, 604, 673
HindIII	AAGCTT	1 cut(s)	798
HinfI	GANTC	4 cut(s)	397, 562, 977, 1059
HphI	GGTGA	3 cut(s)	61, 469, 999
Hpy166II	GTNNAC	2 cut(s)	486, 505
Hpy188I	TCNGA	3 cut(s)	346, 1070, 1160
Hpy188III	TCNNGA	9 cut(s)	47, 97, 476, 683, 737, 815, 947, 1130, 1171
Hpy8I	GTNNAC	2 cut(s)	486, 505
HpyAV	CCTTC	5 cut(s)	76, 245, 536, 944, 1106
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	8 cut(s)	201, 261, 329, 411, 750, 796, 883, 1140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 374, 417, 756
HpyF3I	CTNAG	4 cut(s)	236, 343, 587, 789
Hsp92II	CATG	5 cut(s)	205, 404, 457, 604, 673
Kzo9I	GATC	1 cut(s)	988
LmnI	GCTCC	2 cut(s)	254, 602
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	5 cut(s)	316, 504, 663, 783, 808
MaeI	CTAG	5 cut(s)	185, 272, 317, 873, 984
MaeIII	GTNAC	2 cut(s)	209, 617
MalI	GATC	1 cut(s)	990
MboI	GATC	1 cut(s)	988
MboII	GAAGA	7 cut(s)	25, 83, 253, 331, 725, 919, 935
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	1 cut(s)	988
MhlI	GDGCHC	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	807
MluNI	TGGCCA	1 cut(s)	807
MlyI	GAGTC	1 cut(s)	1053
MmeI	TCCRAC	1 cut(s)	894
Mox20I	TGGCCA	1 cut(s)	807
Mph1103I	ATGCAT	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	4 cut(s)	333, 606, 1053, 1207
MslI	CAYNNNNRTG	1 cut(s)	1046
Msp20I	TGGCCA	1 cut(s)	807
MunI	CAATTG	1 cut(s)	884
MwoI	GCNNNNNNNGC	4 cut(s)	116, 374, 417, 756
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	1 cut(s)	988
NlaIII	CATG	5 cut(s)	205, 404, 457, 604, 673
NlaIV	GGNNCC	2 cut(s)	598, 708
NsiI	ATGCAT	1 cut(s)	331
PceI	AGGCCT	2 cut(s)	194, 1074
PfeI	GAWTC	3 cut(s)	397, 562, 977
PkrI	GCNGC	2 cut(s)	118, 223
PleI	GAGTC	1 cut(s)	1053
PpsI	GAGTC	1 cut(s)	1053
PshBI	ATTAAT	1 cut(s)	1053
PsiI	TTATAA	2 cut(s)	726, 962
PspN4I	GGNNCC	2 cut(s)	598, 708
PsuI	RGATCY	1 cut(s)	988
RsaI	GTAC	1 cut(s)	1200
RsaNI	GTAC	1 cut(s)	1199
RseI	CAYNNNNRTG	1 cut(s)	1046
SaqAI	TTAA	4 cut(s)	333, 606, 1053, 1207
SatI	GCNGC	2 cut(s)	117, 222
Sau3AI	GATC	1 cut(s)	988
SchI	GAGTC	1 cut(s)	1053
SduI	GDGCHC	1 cut(s)	599
SfaNI	GCATC	5 cut(s)	316, 504, 663, 783, 808
SfcI	CTRYAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	2 cut(s)	184, 316
SseBI	AGGCCT	2 cut(s)	194, 1074
SsiI	CCGC	4 cut(s)	110, 116, 143, 1088
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	5 cut(s)	185, 272, 317, 873, 984
StuI	AGGCCT	2 cut(s)	194, 1074
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	294, 1021
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	397, 562, 977
Tru1I	TTAA	4 cut(s)	333, 606, 1053, 1207
Tru9I	TTAA	4 cut(s)	333, 606, 1053, 1207
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	218, 389
VspI	ATTAAT	1 cut(s)	1053
XapI	RAATTY	4 cut(s)	29, 123, 405, 1093
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	5 cut(s)	185, 272, 317, 873, 984
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.