Prupe.6G099000_v2.0.a1

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
6887575 .. 6888444
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G099000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 870 bp
ATGATGAAGCAGCAGAATCAGCCTCTTTTCTCACTCACACTGTTACTGATCTTCTTCTCCCATTGCACCAAAATCTTATCCCAAGCTCCTTCTGCTTCCCCTGCTGCTGCCCCAGCTGCCTCAGCTACCCCAGGTGCCCCAACAATTACAGGGCCAGTGGTGCAAGCACCACCAGCTGATGCCCCTGCACCTTCTGGCCCAACTAATATCACCAAAATCCTTGAGAAAGCAGGTGGCTACAAAGTCTTTATCCGCCTCTTAAAGAGCACCCAAGTTGACAACCAGCTCTACCGCCAACTCAACAACTCAAATAGCCAACTCACCGTTTTCGCCCCAACTGATGATGCCTTCTCAAATCTCGGCACAGGCACACTCAACTCTTTGAGTGATGAGCAAAAAGGGCAGCTCGTACAATTCCATCTGATCCCAGATTTTCTCACAATCCAAAACTTCCAAACTATCAGCAATCCAGTGAGAACCCAAGCTGGATCTGGATTGGACTATCCGCTAAACATTACCACATCAGGCAATTCAGTCAACATTTCCTCTGGCCTTGTGAACACCTCCATTTCAGGCACTGTCTACTCTGATAATCAAATTGCTATTTACCAAGTTGACAGTGTGCTCCAGCCTTATGGTGTTTTTTCTCCCAAGCGTCAACCACCGTCACCAGCTCCAGCTCCAGCACCTGTACTAGGGAAGCCTAAGTTGAATTCTTCGTCATCTGATTCTGATGACAGTGACACTAGTACTACTCCTCCTGTTGCTGAAGTGAAATCTGGAGCTGTGCCTACCGTGCTCCCCAAATTTAATGGCATTGTCTCCATTGCAGTTGCTGTGGTTGCTGCAGCAGCATTAAGCTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009832 GO:0009834 GO:0009987 GO:0016020 GO:0031224 GO:0031225 GO:0042546 GO:0044085 GO:0044425 GO:0044464 GO:0071554 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

290

Amino Acids

30.06

Weight (kDa)

6.71

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 582
AciI CCGC 3 cut(s) 253, 292, 506
AclWI GGATC 2 cut(s) 418, 496
AcsI RAATTY 2 cut(s) 712, 806
AcuI CTGAAG 1 cut(s) 789
AfaI GTAC 3 cut(s) 411, 693, 751
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 1 cut(s) 712
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 130
Alw21I GWGCWC 3 cut(s) 269, 627, 801
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 2 cut(s) 418, 496
AlwNI CAGNNNCTG 3 cut(s) 578, 689, 836
AoxI GGCC 3 cut(s) 152, 196, 550
ApeKI GCWGC 8 cut(s) 10, 104, 107, 116, 403, 845, 848, 851
ApoI RAATTY 2 cut(s) 712, 806
AspS9I GGNCC 2 cut(s) 152, 197
AsuHPI GGTGA 3 cut(s) 202, 313, 660
BaeGI GKGCMC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 134
Bbv12I GWGCWC 3 cut(s) 269, 627, 801
BbvCI CCTCAGC 1 cut(s) 121
BbvI GCAGC 8 cut(s) 22, 91, 94, 103, 415, 832, 860, 863
BccI CCATC 1 cut(s) 426
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 826
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 2 cut(s) 695, 747
BfmI CTRYAG 1 cut(s) 846
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 8 cut(s) 11, 105, 108, 117, 404, 846, 849, 852
BlsI GCNGC 8 cut(s) 12, 106, 109, 118, 405, 847, 850, 853
BmcAI AGTACT 1 cut(s) 751
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 152, 197
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 169, 334
BpmI CTGGAG 4 cut(s) 611, 660, 666, 801
Bpu10I CCTNAGC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 2 cut(s) 155, 470
Bse3DI GCAATG 2 cut(s) 61, 825
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMI GCAATG 2 cut(s) 61, 825
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 155, 470
BseRI GAGGAG 1 cut(s) 747
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 8 cut(s) 22, 91, 94, 103, 415, 832, 860, 863
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 3 cut(s) 154, 198, 552
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 3 cut(s) 269, 627, 801
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 1 cut(s) 826
BsnI GGCC 3 cut(s) 154, 198, 552
Bsp1286I GDGCHC 4 cut(s) 139, 269, 627, 801
Bsp143I GATC 3 cut(s) 48, 423, 488
BspACI CCGC 3 cut(s) 253, 292, 506
BspANI GGCC 3 cut(s) 154, 198, 552
BspCNI CTCAG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 2 cut(s) 418, 496
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 61, 825
BsrI ACTGG 2 cut(s) 155, 470
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 48, 423, 488
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 7 cut(s) 42, 325, 580, 620, 666, 740, 796
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 121, 705
BstENI CCTNNNNNAGG 1 cut(s) 693
BstKTI GATC 3 cut(s) 51, 426, 491
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 3 cut(s) 48, 423, 488
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 8 cut(s) 22, 91, 94, 103, 415, 832, 860, 863
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 3 cut(s) 154, 198, 552
BtsIMutI CAGTG 6 cut(s) 38, 162, 477, 576, 625, 745
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 3 cut(s) 578, 689, 836
Cfr13I GGNCC 2 cut(s) 152, 197
CseI GACGC 1 cut(s) 644
Csp6I GTAC 3 cut(s) 410, 692, 750
CviQI GTAC 3 cut(s) 410, 692, 750
DdeI CTNAG 2 cut(s) 121, 705
DpnI GATC 3 cut(s) 50, 425, 490
DpnII GATC 3 cut(s) 48, 423, 488
EciI GGCGGA 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 712
EcoRII CCWGG 1 cut(s) 130
FaiI YATR 1 cut(s) 636
FalI AAGNNNNNCTT 1 cut(s) 850
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 8 cut(s) 11, 105, 108, 117, 404, 846, 849, 852
Fsp4HI GCNGC 8 cut(s) 11, 105, 108, 117, 404, 846, 849, 852
FspBI CTAG 2 cut(s) 695, 747
GluI GCNGC 8 cut(s) 11, 105, 108, 117, 404, 846, 849, 852
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 4 cut(s) 611, 660, 666, 801
HaeIII GGCC 3 cut(s) 154, 198, 552
HgaI GACGC 1 cut(s) 644
HincII GTYRAC 4 cut(s) 277, 538, 616, 659
HindII GTYRAC 4 cut(s) 277, 538, 616, 659
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 2 cut(s) 16, 728
HphI GGTGA 3 cut(s) 202, 313, 660
Hpy166II GTNNAC 6 cut(s) 277, 538, 559, 583, 616, 659
Hpy188I TCNGA 4 cut(s) 423, 589, 727, 733
Hpy188III TCNNGA 3 cut(s) 492, 780, 867
Hpy8I GTNNAC 6 cut(s) 277, 538, 559, 583, 616, 659
HpyAV CCTTC 3 cut(s) 99, 201, 358
HpyCH4III ACNGT 7 cut(s) 42, 325, 580, 620, 666, 740, 796
HpyCH4V TGCA 5 cut(s) 66, 163, 188, 830, 848
HpyF3I CTNAG 2 cut(s) 121, 705
Kzo9I GATC 3 cut(s) 48, 423, 488
LmnI GCTCC 6 cut(s) 91, 630, 679, 685, 782, 804
Lsp1109I GCAGC 8 cut(s) 22, 91, 94, 103, 415, 832, 860, 863
LweI GCATC 2 cut(s) 169, 334
MaeI CTAG 2 cut(s) 695, 747
MaeIII GTNAC 3 cut(s) 42, 666, 740
MalI GATC 3 cut(s) 50, 425, 490
MboI GATC 3 cut(s) 48, 423, 488
MboII GAAGA 3 cut(s) 43, 46, 708
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 4 cut(s) 139, 269, 627, 801
MluCI AATT 6 cut(s) 144, 413, 529, 597, 712, 806
MnlI CCTC 6 cut(s) 33, 130, 266, 556, 574, 768
MseI TTAA 3 cut(s) 260, 810, 857
MspA1I CMGCKG 2 cut(s) 116, 176
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
NdeII GATC 3 cut(s) 48, 423, 488
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 666, 740
PaqCI CACCTGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 16, 728
PkrI GCNGC 8 cut(s) 12, 106, 109, 118, 405, 847, 850, 853
Psp6I CCWGG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 152, 197
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 3 cut(s) 578, 689, 836
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 2 cut(s) 116, 176
RsaI GTAC 3 cut(s) 411, 693, 751
RsaNI GTAC 3 cut(s) 410, 692, 750
SaqAI TTAA 3 cut(s) 260, 810, 857
SatI GCNGC 8 cut(s) 11, 105, 108, 117, 404, 846, 849, 852
Sau3AI GATC 3 cut(s) 48, 423, 488
Sau96I GGNCC 2 cut(s) 152, 197
ScaI AGTACT 1 cut(s) 751
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 4 cut(s) 139, 269, 627, 801
SfaNI GCATC 2 cut(s) 169, 334
SfcI CTRYAG 1 cut(s) 846
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 6 cut(s) 144, 413, 529, 597, 712, 806
SsiI CCGC 3 cut(s) 253, 292, 506
SspMI CTAG 2 cut(s) 695, 747
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 7 cut(s) 42, 325, 580, 620, 666, 740, 796
TasI AATT 6 cut(s) 144, 413, 529, 597, 712, 806
TatI WGTACW 2 cut(s) 691, 749
TfiI GAWTC 2 cut(s) 16, 728
Tru1I TTAA 3 cut(s) 260, 810, 857
Tru9I TTAA 3 cut(s) 260, 810, 857
TscAI CASTG 6 cut(s) 45, 162, 477, 583, 625, 745
TseFI GTSAC 2 cut(s) 666, 740
TseI GCWGC 8 cut(s) 10, 104, 107, 116, 403, 845, 848, 851
Tsp45I GTSAC 2 cut(s) 666, 740
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 6 cut(s) 45, 162, 477, 583, 625, 745
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 2 cut(s) 712, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 2 cut(s) 695, 747
ZrmI AGTACT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.