Prupe.6G105900_v2.0.a1

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
7503828 .. 7504757
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G105900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 582 bp
ATGGCAAGTTTCGTGTTCATGTTTGTTCCTCTTTCACTCATGTTATTCAATATCATCTTCCTCCTCCCTCACCCATCAATGGCGCAGTCCACCTGCAAAGGCCCATGCCAACCTCAGGCGTCATCGCAACCACCTAGCAGTGATGATTGCGGGCCCTCAGGAACTCTCGCTTGCGATGATGGCCAAAATTTCCCTACATACACATGCTCCCCGCCAGTCATGCCACCCACGAGTGCCAAACTCACACTCAACAATTTCAGCAAAGGCGGTGAGGGCGGCGCCCCATCAGAGTGTGACAATCAATTCCATGACAATACTGAGCGGGTTGTGGCACTTTCCACTGGGTGGTTTAGTAATGAGGCAAGGTGCAATATGACGATAATAATTACTGCGGTAAGTAACGGGATGAGTGTGGAAGCCAAAGTGGTGGACCAATGTGATTCACAGTATGGATGTGATGAAGAGCATGGATTTCTGCCGCCGTGTGAGAACAATATTGTTGACGGCTCTTTGGCTGTTTGGGAGGCTTTGTCGCTCGACACAAATCCGGGTTCTGCAGAGGTTACTTGGTCCACGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.53

Weight (kDa)

4.12

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 322
AciI CCGC 7 cut(s) 150, 212, 267, 276, 322, 392, 479
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 119, 279
AdeI CACNNNGTG 1 cut(s) 345
AfiI CCNNNNNNNGG 3 cut(s) 79, 115, 345
AgsI TTSAA 1 cut(s) 49
AoxI GGCC 4 cut(s) 100, 152, 181, 576
ApaI GGGCCC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 187
AspLEI GCGC 2 cut(s) 85, 281
AspS9I GGNCC 5 cut(s) 101, 152, 153, 430, 570
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 2 cut(s) 62, 281
AvaII GGWCC 2 cut(s) 430, 570
AxyI CCTNAGG 2 cut(s) 114, 157
BaeGI GKGCMC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 229
BccI CCATC 3 cut(s) 82, 173, 292
BceAI ACGGC 2 cut(s) 466, 520
BcnI CCSGG 1 cut(s) 549
BfaI CTAG 2 cut(s) 135, 580
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 277, 479
BlsI GCNGC 2 cut(s) 278, 480
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 2 cut(s) 430, 570
BmgT120I GGNCC 5 cut(s) 101, 152, 153, 430, 570
BmiI GGNNCC 2 cut(s) 154, 280
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 549
BsaHI GRCGYC 2 cut(s) 119, 279
BsaJI CCNNGG 1 cut(s) 573
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 515, 545
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 115, 345
Bse1I ACTGG 2 cut(s) 215, 346
Bse21I CCTNAGG 2 cut(s) 114, 157
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 2 cut(s) 411, 458
BseLI CCNNNNNNNGG 3 cut(s) 79, 115, 345
BseMII CTCAG 3 cut(s) 128, 171, 309
BseNI ACTGG 2 cut(s) 215, 346
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 156
BshFI GGCC 4 cut(s) 102, 154, 183, 578
BshNI GGYRCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 548
BslI CCNNNNNNNGG 3 cut(s) 79, 115, 345
BsnI GGCC 4 cut(s) 102, 154, 183, 578
Bsp120I GGGCCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 156
BspACI CCGC 7 cut(s) 150, 212, 267, 276, 322, 392, 479
BspANI GGCC 4 cut(s) 102, 154, 183, 578
BspCNI CTCAG 3 cut(s) 127, 170, 310
BspLI GGNNCC 2 cut(s) 154, 280
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 322
BsrI ACTGG 2 cut(s) 215, 346
BssECI CCNNGG 1 cut(s) 573
BssNI GRCGYC 2 cut(s) 119, 279
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 2 cut(s) 119, 279
BstC8I GCNNGC 2 cut(s) 152, 172
BstDEI CTNAG 3 cut(s) 114, 157, 318
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 2 cut(s) 411, 458
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 85, 281
BstMWI GCNNNNNNNGC 3 cut(s) 180, 220, 273
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 427
Bsu36I CCTNAGG 2 cut(s) 114, 157
BsuRI GGCC 4 cut(s) 102, 154, 183, 578
BtgI CCRYGG 1 cut(s) 573
BtgZI GCGATG 2 cut(s) 108, 189
BtsCI GGATG 2 cut(s) 411, 458
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 145, 339
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 152, 172
CfoI GCGC 2 cut(s) 85, 281
Cfr13I GGNCC 5 cut(s) 101, 152, 153, 430, 570
CseI GACGC 1 cut(s) 108
CviAII CATG 7 cut(s) 19, 40, 105, 204, 220, 308, 467
CviJI RGCY 8 cut(s) 102, 154, 183, 419, 507, 515, 527, 578
CviKI_1 RGCY 8 cut(s) 102, 154, 183, 419, 507, 515, 527, 578
DdeI CTNAG 3 cut(s) 114, 157, 318
DinI GGCGCC 1 cut(s) 280
DraIII CACNNNGTG 1 cut(s) 345
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 430, 570
Eco81I CCTNAGG 2 cut(s) 114, 157
EcoO109I RGGNCCY 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
FaeI CATG 7 cut(s) 22, 43, 108, 207, 223, 311, 470
FatI CATG 7 cut(s) 18, 39, 104, 203, 219, 307, 466
FauI CCCGC 3 cut(s) 143, 219, 315
Fnu4HI GCNGC 2 cut(s) 277, 479
FokI GGATG 2 cut(s) 418, 465
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 277, 479
FspBI CTAG 2 cut(s) 135, 580
GlaI GCGC 2 cut(s) 84, 280
GluI GCNGC 2 cut(s) 277, 479
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 4 cut(s) 102, 154, 183, 578
HapII CCGG 1 cut(s) 548
HgaI GACGC 1 cut(s) 108
HhaI GCGC 2 cut(s) 85, 281
Hin1I GRCGYC 2 cut(s) 119, 279
Hin1II CATG 7 cut(s) 22, 43, 108, 207, 223, 311, 470
Hin6I GCGC 2 cut(s) 83, 279
HinP1I GCGC 2 cut(s) 83, 279
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 1 cut(s) 440
HpaII CCGG 1 cut(s) 548
HphI GGTGA 2 cut(s) 62, 281
Hpy166II GTNNAC 4 cut(s) 90, 430, 502, 573
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 4 cut(s) 90, 430, 502, 573
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4V TGCA 3 cut(s) 96, 369, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 220, 273
HpyF3I CTNAG 3 cut(s) 114, 157, 318
Hsp92I GRCGYC 2 cut(s) 119, 279
Hsp92II CATG 7 cut(s) 22, 43, 108, 207, 223, 311, 470
HspAI GCGC 2 cut(s) 83, 279
KasI GGCGCC 1 cut(s) 278
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 6 cut(s) 101, 106, 144, 228, 327, 561
MaeI CTAG 2 cut(s) 135, 580
MaeIII GTNAC 3 cut(s) 293, 398, 562
MbiI CCGCTC 1 cut(s) 322
MboII GAAGA 2 cut(s) 49, 473
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 4 cut(s) 187, 253, 302, 384
MluNI TGGCCA 1 cut(s) 183
Mly113I GGCGCC 1 cut(s) 279
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 202, 289
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 180, 220, 273
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 1 cut(s) 549
NlaIII CATG 7 cut(s) 22, 43, 108, 207, 223, 311, 470
NlaIV GGNNCC 2 cut(s) 154, 280
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 1 cut(s) 207
PaqCI CACCTGC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 440
PflMI CCANNNNNTGG 1 cut(s) 345
PkrI GCNGC 2 cut(s) 278, 480
PluTI GGCGCC 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 154, 280
PspOMI GGGCCC 1 cut(s) 152
PspPI GGNCC 5 cut(s) 101, 152, 153, 430, 570
PstI CTGCAG 1 cut(s) 559
RseI CAYNNNNRTG 2 cut(s) 202, 289
SapI GCTCTTC 1 cut(s) 456
SatI GCNGC 2 cut(s) 277, 479
Sau96I GGNCC 5 cut(s) 101, 152, 153, 430, 570
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 95, 115, 136, 368, 564
SfcI CTRYAG 1 cut(s) 555
SfoI GGCGCC 1 cut(s) 280
SinI GGWCC 2 cut(s) 430, 570
SmiMI CAYNNNNRTG 2 cut(s) 202, 289
Sse9I AATT 4 cut(s) 187, 253, 302, 384
SsiI CCGC 7 cut(s) 150, 212, 267, 276, 322, 392, 479
SspDI GGCGCC 1 cut(s) 278
SspI AATATT 1 cut(s) 496
SspMI CTAG 2 cut(s) 135, 580
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 537
TasI AATT 4 cut(s) 187, 253, 302, 384
TauI GCSGC 2 cut(s) 279, 481
TfiI GAWTC 1 cut(s) 440
TscAI CASTG 2 cut(s) 145, 346
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 7, 474
TspRI CASTG 2 cut(s) 145, 346
Van91I CCANNNNNTGG 1 cut(s) 345
VpaK11BI GGWCC 2 cut(s) 430, 570
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 207
XspI CTAG 2 cut(s) 135, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.