Prupe.6G106000_v2.0.a1

Kiwellin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
7504689 .. 7506250
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G106000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 390 bp
ATGGCAAATTTAATGTTAATATGGTTTTCTCTTTCCCTCATCATCTTCAATCCTATCTTCCTCCCTCTCTCATCAACCGCCATCTCCTCCTGCAATGGTCCATGCAAAACCGTCAACGATTGTGCCATGGTGGATGAATGCGATTCGCGTAATGGATGTGATGCAGAGCATGCAGGGCAACCGCCATTTCATCGAAAAGGCTTGAAACCCAGTAATCGCCTTGGGATCTTGCTGCTGCTAATGGTCGCTGAAGGTCGAGCTCTGGTCGTACATATGGGTCTGGGACGACTAGGCATGGGTCTCTGTTTGGCTATCAGAATAGCGCACGATGTCAGCCCTAAGCTAGGAAGGCGACGACCATGGGGCCCAACTTTGGGGGGCCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.9

Weight (kDa)

9.15

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 148
AciI CCGC 2 cut(s) 78, 182
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 344, 373, 374
AgsI TTSAA 2 cut(s) 49, 205
AluBI AGCT 2 cut(s) 260, 343
AluI AGCT 2 cut(s) 260, 343
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 233
AoxI GGCC 2 cut(s) 364, 379
ApaI GGGCCC 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 232, 235
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 4 cut(s) 98, 364, 365, 379
AvaII GGWCC 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 262, 368
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 219, 222
BccI CCATC 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 3 cut(s) 290, 344, 388
BisI GCNGC 2 cut(s) 233, 236
BlsI GCNGC 2 cut(s) 234, 237
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 4 cut(s) 98, 364, 365, 379
BmiI GGNNCC 3 cut(s) 365, 366, 380
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 126, 220, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 373, 374
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 126, 220, 359
BseGI GGATG 2 cut(s) 139, 161
BseLI CCNNNNNNNGG 3 cut(s) 344, 373, 374
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 2 cut(s) 219, 222
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 366, 381
BsiHKAI GWGCWC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 344, 373, 374
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 366, 381
Bso31I GGTCTC 1 cut(s) 305
Bsp120I GGGCCC 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 262, 368
Bsp143I GATC 1 cut(s) 225
Bsp19I CCATGG 2 cut(s) 126, 359
BspACI CCGC 2 cut(s) 78, 182
BspANI GGCC 2 cut(s) 366, 381
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 365, 366, 380
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 126, 220, 359
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 3 cut(s) 126, 220, 359
Bst4CI ACNGT 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 2 cut(s) 126, 359
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 139, 161
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 170, 175, 349
BstNSI RCATGY 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 219, 222
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 2 cut(s) 366, 381
BtgI CCRYGG 2 cut(s) 126, 359
BtsCI GGATG 2 cut(s) 139, 161
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 4 cut(s) 98, 364, 365, 379
Csp6I GTAC 1 cut(s) 269
CviAII CATG 5 cut(s) 102, 127, 170, 295, 360
CviJI RGCY 7 cut(s) 201, 260, 311, 336, 343, 366, 381
CviKI_1 RGCY 7 cut(s) 201, 260, 311, 336, 343, 366, 381
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 3 cut(s) 126, 220, 359
Eco24I GRGCYC 2 cut(s) 262, 368
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoO109I RGGNCCY 2 cut(s) 364, 379
EcoT14I CCWWGG 3 cut(s) 126, 220, 359
EcoT38I GRGCYC 2 cut(s) 262, 368
ErhI CCWWGG 3 cut(s) 126, 220, 359
FaeI CATG 5 cut(s) 105, 130, 173, 298, 363
FaiI YATR 8 cut(s) 22, 103, 128, 171, 273, 275, 296, 361
FaqI GGGAC 1 cut(s) 297
FatI CATG 5 cut(s) 101, 126, 169, 294, 359
FauNDI CATATG 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 233, 236
FokI GGATG 2 cut(s) 146, 168
FriOI GRGCYC 2 cut(s) 262, 368
Fsp4HI GCNGC 2 cut(s) 233, 236
FspBI CTAG 3 cut(s) 290, 344, 388
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 233, 236
HaeIII GGCC 2 cut(s) 366, 381
HhaI GCGC 1 cut(s) 325
Hin1II CATG 5 cut(s) 105, 130, 173, 298, 363
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 2 cut(s) 245, 342
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 93, 105, 164, 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 175, 349
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 5 cut(s) 105, 130, 173, 298, 363
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 103, 159, 223, 248, 266
Lsp1109I GCAGC 2 cut(s) 219, 222
LweI GCATC 1 cut(s) 151
MaeI CTAG 3 cut(s) 290, 344, 388
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 2 cut(s) 37, 49
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 2 cut(s) 262, 368
MluCI AATT 1 cut(s) 7
MnlI CCTC 4 cut(s) 47, 71, 75, 97
MseI TTAA 2 cut(s) 11, 17
Mva1269I GAATGC 1 cut(s) 143
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 170, 175, 349
NcoI CCATGG 2 cut(s) 126, 359
NdeI CATATG 1 cut(s) 273
NdeII GATC 1 cut(s) 225
NlaIII CATG 5 cut(s) 105, 130, 173, 298, 363
NlaIV GGNNCC 3 cut(s) 365, 366, 380
NspI RCATGY 1 cut(s) 173
PaeI GCATGC 1 cut(s) 173
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 234, 237
Psp124BI GAGCTC 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 365, 366, 380
PspOMI GGGCCC 1 cut(s) 364
PspPI GGNCC 4 cut(s) 98, 364, 365, 379
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 11, 17
SatI GCNGC 2 cut(s) 233, 236
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 4 cut(s) 98, 364, 365, 379
SduI GDGCHC 2 cut(s) 262, 368
SetI ASST 3 cut(s) 256, 262, 345
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 98
SphI GCATGC 1 cut(s) 173
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 78, 182
SspMI CTAG 3 cut(s) 290, 344, 388
SstI GAGCTC 1 cut(s) 262
StyI CCWWGG 3 cut(s) 126, 220, 359
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 193, 256
TasI AATT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 11, 17
Tru9I TTAA 2 cut(s) 11, 17
TseI GCWGC 2 cut(s) 232, 235
TspDTI ATGAA 2 cut(s) 150, 179
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 173
XspI CTAG 3 cut(s) 290, 344, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.