Prupe.6G107100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
7621563 .. 7622459
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G107100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 270 bp
ATGCGAACGAACATACATGTTCAGCCAAGTCCAAGTCAAGTCGAGCACGTGGGTTGGATCACAAAAGTGGAGATAGCAGCGCCTTGTTCAATGGGGGTTTTACAGAGAGAGACACAATTGTTCAATTGGGGGTTTTCCGAAGTCTCTCTCTCTCTTCATCTCTATAAGTCTATATGGCCATGGAAAACGTTGAACTTGGAGTCATTAGTAACCAGTTCGCGATGTAGCTTCTATATCCCATCATCGTCAGCCTGGTGGGAGCGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.31

Weight (kDa)

7.85

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 262
AccII CGCG 1 cut(s) 220
AciI CCGC 1 cut(s) 262
AclI AACGTT 1 cut(s) 188
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 176
AcvI CACGTG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 90, 124, 193
AjnI CCWGG 1 cut(s) 251
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 104, 148
AlwI GGATC 1 cut(s) 65
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 82
BalI TGGCCA 1 cut(s) 178
BbrPI CACGTG 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 104, 148
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 179
BsaXI ACNNNNNCTCC 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 104, 148
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 57
Bsp19I CCATGG 1 cut(s) 179
Bsp68I TCGCGA 1 cut(s) 220
BspACI CCGC 1 cut(s) 262
BspANI GGCC 1 cut(s) 178
BspFNI CGCG 1 cut(s) 220
BspPI GGATC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 2 cut(s) 104, 148
BstMBI GATC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 270
BtuMI TCGCGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 82
CviAII CATG 2 cut(s) 17, 180
CviJI RGCY 4 cut(s) 25, 178, 228, 251
CviKI_1 RGCY 4 cut(s) 25, 178, 228, 251
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 20, 183
FaiI YATR 7 cut(s) 14, 18, 165, 173, 175, 181, 234
FatI CATG 2 cut(s) 16, 179
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 1 cut(s) 178
HhaI GCGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 20, 183
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 48, 188
HpySE526I ACGT 2 cut(s) 48, 188
Hsp92II CATG 2 cut(s) 20, 183
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 226, 238, 265
Lsp1109I GCAGC 1 cut(s) 89
MaeII ACGT 2 cut(s) 48, 188
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 59
MbiI CCGCTC 1 cut(s) 262
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 146
MfeI CAATTG 2 cut(s) 116, 124
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 2 cut(s) 116, 124
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 35
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 2 cut(s) 116, 124
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 220
NcoI CCATGG 1 cut(s) 179
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 20, 183
NruI TCGCGA 1 cut(s) 220
NspI RCATGY 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 65
PciI ACATGT 1 cut(s) 16
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 208
PmaCI CACGTG 1 cut(s) 49
PmlI CACGTG 1 cut(s) 49
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 49
PscI ACATGT 1 cut(s) 16
Psp1406I AACGTT 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 251
PspCI CACGTG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 251
RruI TCGCGA 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 65
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 51, 191, 230
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 2 cut(s) 116, 124
SsiI CCGC 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 179
TaiI ACGT 2 cut(s) 51, 191
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 116, 124
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 146
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.