Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7983877 .. 7992517

Gene Structure 8641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G111200.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGAAAACGAGGTACAAGAAGCTATCTGGAAGTCAAAACCTAAGACAACAGCTTGTATTGTCTACACTCACCTTCACGCCCATTCAAATTCACGACATACGAACCAACGAGACATGGCCTGGTCTCCTCAAGTACGAGGTCTCCCTGGTCAAGTTGCTCGCCTTGGTCCACCATGGCTGTTCTTTCGAAATCAACGACACTGGCACTGGATTTAAGTTCAAGCCAGGGATAGCGATGGGTCGGTTGAAACTGGACCACGACTGTGGTTTTGAGCGGTCTATTGGGTATTTCTTGGAGCCCTTGAGTTTGCTTGGCCTCTTTGCCAAGAAACCCATTACCATTACGCTTAAAGGAATTACAAATGATTCCAAGGGCCCATCTATTGATACCTTCCGGTCTACTACCTTTCCCATTTTAAAACGCTTTGGAGTTCCCTCAGAAGGATTGGAGCTGGAAATAAGGAGTCATGGATGCGCTCCTAAAGGCGGTGGTGAAGTCGTTGTGGCAATCCCAGTTGTTCAAAGTCTTGAATGTGTTAAATTCTCAACGAGAGTGTCTGTGCAGTTTGAAAATACAATGGTACATGCAGCTCGAGGAGTCTTTCATCCCTTCCTTCCAGATGTTCACATATTTACTGACCATAGAGCTGGCCCACAAGCTGGAGAGTCACATGGGGAACACATATCTGAAGTTGACTATGAGAAGAAAGAGCTGGTGCCTCCAAAGGATGTTGGTTTGAAAATTGCTTCTGTTCTGCTTGGGGAGATTGGGCAGGGCGGAGTGGTCGATTCAAATCACCAGTTTGCTGCCATTTGGGTTTGTAGGGTTTGTTTTTTCTTCTTTGTTTCATTATGTCCCCAAGATGCTTCAAAAGTTCGGGTCGGAAAGCTCTCTCCTTATGGGATAGATACACTCAAAAACATCAGTGATTTTCTCGGAGTTAAATTTGTCATTATGCCGTGCGCATCCACAAGTACTGTTCTTCTCAAGTGTGTGGGCTGTGGTATGAGGAAGCTATCTAGAAAGATTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RTC RTC_insert

Protein Analysis

346

Amino Acids

37.93

Weight (kDa)

9.02

Isoelectric Point (pI)

24.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	967
AccB1I	GGYRCC	1 cut(s)	718
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	277
AccI	GTMKAC	2 cut(s)	65, 401
AciI	CCGC	3 cut(s)	277, 489, 780
AcsI	RAATTY	3 cut(s)	90, 542, 947
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	4 cut(s)	17, 137, 585, 979
AfiI	CCNNNNNNNGG	3 cut(s)	443, 488, 662
AgsI	TTSAA	9 cut(s)	89, 223, 250, 524, 533, 572, 742, 795, 873
AjnI	CCWGG	3 cut(s)	121, 147, 226
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	9 cut(s)	25, 55, 454, 593, 650, 662, 715, 892, 1018
AluI	AGCT	9 cut(s)	25, 55, 454, 593, 650, 662, 715, 892, 1018
Alw26I	GTCTC	3 cut(s)	107, 131, 148
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	4 cut(s)	119, 316, 376, 652
ApaI	GGGCCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	590, 809
ApoI	RAATTY	3 cut(s)	90, 542, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspLEI	GCGC	2 cut(s)	479, 968
AspS9I	GGNCC	5 cut(s)	169, 256, 376, 377, 653
AsuHPI	GGTGA	3 cut(s)	64, 506, 791
AsuII	TTCGAA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	594
AvaII	GGWCC	2 cut(s)	169, 256
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	718
BanII	GRGCYC	2 cut(s)	303, 380
BbvI	GCAGC	2 cut(s)	602, 796
BccI	CCATC	2 cut(s)	232, 388
BceAI	ACGGC	1 cut(s)	946
BciT130I	CCWGG	3 cut(s)	123, 149, 228
BcoDI	GTCTC	3 cut(s)	107, 131, 148
BfaI	CTAG	1 cut(s)	1023
BisI	GCNGC	2 cut(s)	591, 810
BlsI	GCNGC	2 cut(s)	592, 811
BmcAI	AGTACT	1 cut(s)	979
Bme1390I	CCNGG	3 cut(s)	123, 149, 228
Bme18I	GGWCC	2 cut(s)	169, 256
BmeT110I	CYCGRG	1 cut(s)	594
BmgT120I	GGNCC	5 cut(s)	169, 256, 376, 377, 653
BmiI	GGNNCC	3 cut(s)	300, 378, 720
BmrFI	CCNGG	3 cut(s)	123, 149, 228
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	3 cut(s)	464, 856, 977
BmuI	ACTGGG	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	116, 325, 974
BsaBI	GATNNNNATC	1 cut(s)	795
BsaI	GGTCTC	2 cut(s)	131, 148
BsaJI	CCNNGG	5 cut(s)	147, 165, 175, 227, 372
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 488, 662
Bse1I	ACTGG	5 cut(s)	208, 214, 258, 515, 802
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	3 cut(s)	123, 149, 228
BseDI	CCNNGG	5 cut(s)	147, 165, 175, 227, 372
BseGI	GGATG	4 cut(s)	479, 607, 736, 968
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	3 cut(s)	443, 488, 662
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	5 cut(s)	208, 214, 258, 515, 802
BseRI	GAGGAG	2 cut(s)	119, 612
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	602, 796
BsgI	GTGCAG	1 cut(s)	584
BshFI	GGCC	4 cut(s)	121, 318, 378, 654
BshNI	GGYRCC	1 cut(s)	718
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	843
BslI	CCNNNNNNNGG	3 cut(s)	443, 488, 662
BsmAI	GTCTC	3 cut(s)	107, 131, 148
BsmFI	GGGAC	1 cut(s)	843
BsnI	GGCC	4 cut(s)	121, 318, 378, 654
Bso31I	GGTCTC	2 cut(s)	131, 148
BsoBI	CYCGRG	1 cut(s)	594
Bsp119I	TTCGAA	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	303, 380
Bsp19I	CCATGG	1 cut(s)	175
BspACI	CCGC	3 cut(s)	277, 489, 780
BspANI	GGCC	4 cut(s)	121, 318, 378, 654
BspCNI	CTCAG	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	300, 378, 720
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	718
BspTNI	GGTCTC	2 cut(s)	131, 148
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	5 cut(s)	208, 214, 258, 515, 802
BssECI	CCNNGG	5 cut(s)	147, 165, 175, 227, 372
BssT1I	CCWWGG	3 cut(s)	165, 175, 372
Bst2UI	CCWGG	3 cut(s)	123, 149, 228
Bst4CI	ACNGT	2 cut(s)	266, 982
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	162, 652
BstDEI	CTNAG	2 cut(s)	44, 439
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	479, 607, 736, 968
BstHHI	GCGC	2 cut(s)	479, 968
BstMAI	GTCTC	3 cut(s)	107, 131, 148
BstNI	CCWGG	3 cut(s)	123, 149, 228
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	3 cut(s)	121, 147, 226
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	602, 796
BstXI	CCANNNNNNTGG	2 cut(s)	266, 650
BsuRI	GGCC	4 cut(s)	121, 318, 378, 654
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	479, 607, 736, 968
BtsIMutI	CAGTG	3 cut(s)	201, 207, 934
Cac8I	GCNNGC	2 cut(s)	162, 652
CfoI	GCGC	2 cut(s)	479, 968
Cfr13I	GGNCC	5 cut(s)	169, 256, 376, 377, 653
Csp6I	GTAC	4 cut(s)	16, 136, 584, 978
CviAII	CATG	5 cut(s)	117, 176, 470, 587, 674
CviQI	GTAC	4 cut(s)	16, 136, 584, 978
DdeI	CTNAG	2 cut(s)	44, 439
DraI	TTTAAA	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	795
Eco130I	CCWWGG	3 cut(s)	165, 175, 372
Eco24I	GRGCYC	2 cut(s)	303, 380
Eco31I	GGTCTC	2 cut(s)	131, 148
Eco47I	GGWCC	2 cut(s)	169, 256
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	3 cut(s)	121, 147, 226
EcoT14I	CCWWGG	3 cut(s)	165, 175, 372
EcoT38I	GRGCYC	2 cut(s)	303, 380
ErhI	CCWWGG	3 cut(s)	165, 175, 372
FaeI	CATG	5 cut(s)	120, 179, 473, 590, 677
FaqI	GGGAC	1 cut(s)	843
FatI	CATG	5 cut(s)	116, 175, 469, 586, 673
FblI	GTMKAC	2 cut(s)	65, 401
Fnu4HI	GCNGC	2 cut(s)	591, 810
FokI	GGATG	4 cut(s)	486, 594, 743, 955
FriOI	GRGCYC	2 cut(s)	303, 380
Fsp4HI	GCNGC	2 cut(s)	591, 810
FspAI	RTGCGCAY	1 cut(s)	967
FspBI	CTAG	1 cut(s)	1023
FspI	TGCGCA	1 cut(s)	967
GlaI	GCGC	2 cut(s)	478, 967
GluI	GCNGC	2 cut(s)	591, 810
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	4 cut(s)	121, 318, 378, 654
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	2 cut(s)	479, 968
Hin1II	CATG	5 cut(s)	120, 179, 473, 590, 677
Hin6I	GCGC	2 cut(s)	477, 966
HinP1I	GCGC	2 cut(s)	477, 966
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	5 cut(s)	368, 466, 600, 668, 791
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	3 cut(s)	64, 506, 791
Hpy166II	GTNNAC	5 cut(s)	66, 172, 402, 628, 697
Hpy188I	TCNGA	4 cut(s)	442, 691, 887, 941
Hpy188III	TCNNGA	6 cut(s)	30, 95, 530, 620, 1023, 1035
Hpy8I	GTNNAC	5 cut(s)	66, 172, 402, 628, 697
HpyAV	CCTTC	5 cut(s)	85, 403, 437, 622, 626
HpyCH4III	ACNGT	2 cut(s)	266, 982
HpyCH4V	TGCA	2 cut(s)	565, 590
HpyF3I	CTNAG	2 cut(s)	44, 439
Hsp92II	CATG	5 cut(s)	120, 179, 473, 590, 677
HspAI	GCGC	2 cut(s)	477, 966
LmnI	GCTCC	3 cut(s)	298, 451, 484
Lsp1109I	GCAGC	2 cut(s)	602, 796
LweI	GCATC	3 cut(s)	464, 856, 977
MaeI	CTAG	1 cut(s)	1023
MaeIII	GTNAC	1 cut(s)	669
MbiI	CCGCTC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	718, 832, 977
MhlI	GDGCHC	2 cut(s)	303, 380
MluCI	AATT	5 cut(s)	90, 357, 542, 744, 947
MlyI	GAGTC	3 cut(s)	475, 609, 677
MmeI	TCCRAC	1 cut(s)	865
MnlI	CCTC	8 cut(s)	6, 133, 140, 329, 448, 590, 732, 1005
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	5 cut(s)	216, 351, 419, 540, 945
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	3 cut(s)	123, 149, 228
MvaI	CCWGG	3 cut(s)	123, 149, 228
NcoI	CCATGG	1 cut(s)	175
NlaIII	CATG	5 cut(s)	120, 179, 473, 590, 677
NlaIV	GGNNCC	3 cut(s)	300, 378, 720
NmuCI	GTSAC	1 cut(s)	669
NsbI	TGCGCA	1 cut(s)	967
NspI	RCATGY	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	2 cut(s)	368, 791
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	2 cut(s)	592, 811
PleI	GAGTC	3 cut(s)	474, 608, 676
PpsI	GAGTC	3 cut(s)	474, 608, 676
Psp6I	CCWGG	3 cut(s)	121, 147, 226
PspGI	CCWGG	3 cut(s)	121, 147, 226
PspN4I	GGNNCC	3 cut(s)	300, 378, 720
PspOMI	GGGCCC	1 cut(s)	376
PspPI	GGNCC	5 cut(s)	169, 256, 376, 377, 653
PspXI	VCTCGAGB	1 cut(s)	594
RsaI	GTAC	4 cut(s)	17, 137, 585, 979
RsaNI	GTAC	4 cut(s)	16, 136, 584, 978
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	5 cut(s)	216, 351, 419, 540, 945
SatI	GCNGC	2 cut(s)	591, 810
Sau96I	GGNCC	5 cut(s)	169, 256, 376, 377, 653
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	3 cut(s)	475, 609, 677
ScrFI	CCNGG	3 cut(s)	123, 149, 228
SduI	GDGCHC	2 cut(s)	303, 380
SfaNI	GCATC	3 cut(s)	464, 856, 977
Sfr274I	CTCGAG	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	2 cut(s)	169, 256
SlaI	CTCGAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	4 cut(s)	131, 304, 594, 989
SmoI	CTYRAG	4 cut(s)	131, 304, 594, 989
Sse9I	AATT	5 cut(s)	90, 357, 542, 744, 947
SsiI	CCGC	3 cut(s)	277, 489, 780
SspMI	CTAG	1 cut(s)	1023
StyD4I	CCNGG	3 cut(s)	121, 147, 226
StyI	CCWWGG	3 cut(s)	165, 175, 372
TaaI	ACNGT	2 cut(s)	266, 982
TaqI	TCGA	3 cut(s)	189, 595, 789
TasI	AATT	5 cut(s)	90, 357, 542, 744, 947
TatI	WGTACW	1 cut(s)	977
TfiI	GAWTC	2 cut(s)	368, 791
Tru1I	TTAA	5 cut(s)	216, 351, 419, 540, 945
Tru9I	TTAA	5 cut(s)	216, 351, 419, 540, 945
TscAI	CASTG	3 cut(s)	208, 214, 934
TseFI	GTSAC	1 cut(s)	669
TseI	GCWGC	2 cut(s)	590, 809
Tsp45I	GTSAC	1 cut(s)	669
TspDTI	ATGAA	2 cut(s)	596, 840
TspRI	CASTG	3 cut(s)	208, 214, 934
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	169, 256
XapI	RAATTY	3 cut(s)	90, 542, 947
XbaI	TCTAGA	1 cut(s)	1022
XceI	RCATGY	1 cut(s)	590
XhoI	CTCGAG	1 cut(s)	594
XmiI	GTMKAC	2 cut(s)	65, 401
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	1 cut(s)	1023
ZrmI	AGTACT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.