Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8013215 .. 8013791

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G111600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGACTACGGGACTAGAGGCCTTCGTGGTGGAAATGGAATTGGGAATTAATAATGGGATTTTAGGAGAACCGCCAACTCCCTCTCTTTTGCTGTATTACGGGGACAACCACTCCGCTGTGGTTCAACTGCATCAGAGGGAGGACGTGGAGAAGTTGATTGCAGAGCATAAGGTGGACCACAAGCTGATTGTGCTTGATGTGGGGCTCAGGCACTGTGGGCCCTGTGTGAAGGTGTATCCGACGGTGGTGAAGCTGTCCAGGAAGATGTCAGACACGGTGTTCCTCAAGGACATGGAGGTGGTGGAGGTGCCTACTTTCTTGTTCATTAGAGATGGTGAGATTTGCGAGAGGTATGTGGGCTCTGGTAAAGGGGAGCTTATTGGTGAGATTCTGAGATACCAAGGAGTCCGTGTGACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009941 GO:0009987 GO:0010035 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

5.51

Isoelectric Point (pI)

20.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	2 cut(s)	71, 114
AgsI	TTSAA	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	184, 253, 376
AluI	AGCT	3 cut(s)	184, 253, 376
AlwNI	CAGNNNCTG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	18, 218
ApaI	GGGCCC	1 cut(s)	222
AseI	ATTAAT	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	175, 218, 219
AsuHPI	GGTGA	3 cut(s)	259, 347, 395
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	3 cut(s)	207, 222, 362
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	175, 218, 219
BmiI	GGNNCC	2 cut(s)	220, 309
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	3 cut(s)	95, 125, 396
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	220, 383
BseSI	GKGCMC	1 cut(s)	222
BshFI	GGCC	2 cut(s)	20, 220
BshNI	GGYRCC	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	24, 116
BsmFI	GGGAC	2 cut(s)	24, 116
BsnI	GGCC	2 cut(s)	20, 220
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	207, 222, 362
BspACI	CCGC	2 cut(s)	71, 114
BspANI	GGCC	2 cut(s)	20, 220
BspCNI	CTCAG	2 cut(s)	219, 384
BspLI	GGNNCC	2 cut(s)	220, 309
BspT107I	GGYRCC	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	215, 244, 277
BstDEI	CTNAG	2 cut(s)	206, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 217
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	20, 220
BtrI	CACGTC	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	175, 218, 219
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	20, 184, 205, 220, 253, 360, 376
CviKI_1	RGCY	7 cut(s)	20, 184, 205, 220, 253, 360, 376
DdeI	CTNAG	2 cut(s)	206, 392
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	20
Eco24I	GRGCYC	3 cut(s)	207, 222, 362
Eco47I	GGWCC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	3 cut(s)	207, 222, 362
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	168, 293, 354
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	24, 116
FatI	CATG	1 cut(s)	291
FriOI	GRGCYC	3 cut(s)	207, 222, 362
FspBI	CTAG	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	20, 220
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	2 cut(s)	388, 405
HphI	GGTGA	3 cut(s)	259, 347, 395
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	135, 240, 271, 393
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	31, 223
HpyCH4III	ACNGT	3 cut(s)	215, 244, 277
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	130, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 217
HpyF3I	CTNAG	2 cut(s)	206, 392
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	5 cut(s)	193, 235, 244, 271, 348
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	412
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	3 cut(s)	207, 222, 362
MluCI	AATT	2 cut(s)	38, 45
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	8 cut(s)	10, 91, 129, 133, 289, 293, 298, 342
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	190, 217
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	220, 309
NmuCI	GTSAC	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	257
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	220, 309
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	175, 218, 219
PstNI	CAGNNNCTG	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	175, 218, 219
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	3 cut(s)	207, 222, 362
SetI	ASST	9 cut(s)	147, 174, 186, 234, 255, 300, 309, 353, 378
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	38, 45
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	2 cut(s)	71, 114
SspMI	CTAG	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	3 cut(s)	215, 244, 277
TaiI	ACGT	1 cut(s)	147
TasI	AATT	2 cut(s)	38, 45
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	175
VspI	ATTAAT	1 cut(s)	48
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.