Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8058470 .. 8063480

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G112100.1_v2.0.a1.CDS.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTGCAGGGTACAAGAAGCTATTTGGAAGCCAAAACCTAAGACAACAGCTTGTGTTGTCTACACTCACCTTCACGCCCATTCAAATTCACGACATACGGAACAACGAGACATGGCCCGGTCTCCGCAAGTACGAGGTCTCCCTCCTCAAGTTGCTCGCTTTGGTCTGCCATGGTTGTTCTTTCGAAATCAACGACACTGGCAATGGATTTAAGTTCAAGCCAGGGATAGTGATGGGTGGGTCGAAACTGGAACACGACTGTGGTGTTGAGCGGTCTATTGGGTCACATGGTTATGGAATGTCACTAGTTGCAGAAACAACCTCTGGCTGCTATATCTCTGCTGATACAACTATTTCTCATGCACGAGGGGAACAAATATCTGAAGTTGACTCTGAGAAGAAAGAGCTGGTGCCTCCAAAGGATGTTGGTTTGAAAATTGCTTCTGTTCTGCTTGGGGAGATTGGGCAGGGCGGAGTGGTAGATTTAAATCTCCAGGGTTTGTTGTTTCTTCTTTGTGCATTATGTCCCCAAGATGTTTCAAAAGTTCGGGTCGGAAAGCTCTCTCCTTATGGGATAGATACACTGAAAAACATTAATGATTTTCTCGGAGTTAAATTTGTCATTACGCCATGCGCATCCACAAGTACTGTTTTTCTCAAGTGTGTGGGCTGTGGTTTGAGGAAGCTATCTAGAAAGATTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RTC RTC_insert

Protein Analysis

236

Amino Acids

25.35

Weight (kDa)

8.69

Isoelectric Point (pI)

19.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	412
AccBSI	CCGCTC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	3 cut(s)	127, 274, 474
AcsI	RAATTY	2 cut(s)	87, 617
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	3 cut(s)	14, 134, 649
AgsI	TTSAA	4 cut(s)	86, 220, 436, 543
AhlI	ACTAGT	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	223, 495
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	22, 52, 409, 562, 688
AluI	AGCT	5 cut(s)	22, 52, 409, 562, 688
Alw26I	GTCTC	3 cut(s)	104, 128, 145
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	5, 330
ApoI	RAATTY	2 cut(s)	87, 617
AseI	ATTAAT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	225, 497
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	104, 128, 145
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	2 cut(s)	308, 693
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	6, 331
BlsI	GCNGC	2 cut(s)	7, 332
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	3 cut(s)	120, 225, 497
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	3 cut(s)	120, 225, 497
BmsI	GCATC	1 cut(s)	647
BpmI	CTGGAG	1 cut(s)	479
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	2 cut(s)	134, 644
BpuMI	CCSGG	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	128, 145
BsaJI	CCNNGG	3 cut(s)	172, 224, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse1I	ACTGG	2 cut(s)	205, 255
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	225, 497
BseDI	CCNNGG	3 cut(s)	172, 224, 496
BseGI	GGATG	2 cut(s)	430, 638
BseJI	GATNNNNATC	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	205, 255
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	317
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	513
BsmAI	GTCTC	3 cut(s)	104, 128, 145
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	118
Bso31I	GGTCTC	2 cut(s)	128, 145
Bsp119I	TTCGAA	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	3 cut(s)	127, 274, 474
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	10
BspT104I	TTCGAA	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	412
BspTNI	GGTCTC	2 cut(s)	128, 145
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	205, 255
BssECI	CCNNGG	3 cut(s)	172, 224, 496
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	225, 497
Bst4CI	ACNGT	2 cut(s)	263, 652
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	41, 396
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	430, 638
BstHHI	GCGC	1 cut(s)	638
BstMAI	GTCTC	3 cut(s)	104, 128, 145
BstNI	CCWGG	2 cut(s)	225, 497
BstSCI	CCNGG	3 cut(s)	118, 223, 495
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	430, 638
BtsIMutI	CAGTG	2 cut(s)	198, 584
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	13, 133, 648
CviAII	CATG	5 cut(s)	114, 173, 290, 362, 633
CviQI	GTAC	3 cut(s)	13, 133, 648
DdeI	CTNAG	2 cut(s)	41, 396
DraI	TTTAAA	1 cut(s)	489
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	2 cut(s)	128, 145
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	223, 495
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	117, 176, 293, 365, 636
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	5 cut(s)	113, 172, 289, 361, 632
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	6, 331
FokI	GGATG	2 cut(s)	437, 625
Fsp4HI	GCNGC	2 cut(s)	6, 331
FspAI	RTGCGCAY	1 cut(s)	637
FspBI	CTAG	2 cut(s)	308, 693
FspI	TGCGCA	1 cut(s)	637
GlaI	GCGC	1 cut(s)	637
GluI	GCNGC	2 cut(s)	6, 331
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	5 cut(s)	117, 176, 293, 365, 636
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	63, 391
Hpy188I	TCNGA	4 cut(s)	385, 397, 557, 611
Hpy188III	TCNNGA	3 cut(s)	92, 693, 705
Hpy8I	GTNNAC	2 cut(s)	63, 391
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	263, 652
HpyCH4V	TGCA	4 cut(s)	8, 314, 365, 521
HpyF3I	CTNAG	2 cut(s)	41, 396
Hsp92II	CATG	5 cut(s)	117, 176, 293, 365, 636
HspAI	GCGC	1 cut(s)	636
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	647
MaeI	CTAG	2 cut(s)	308, 693
MaeIII	GTNAC	2 cut(s)	285, 303
MbiI	CCGCTC	1 cut(s)	274
MboII	GAAGA	2 cut(s)	412, 503
MluCI	AATT	3 cut(s)	87, 438, 617
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	7 cut(s)	130, 155, 158, 334, 362, 426, 675
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	4 cut(s)	213, 488, 597, 615
MslI	CAYNNNNRTG	2 cut(s)	261, 294
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	3 cut(s)	120, 225, 497
MvaI	CCWGG	2 cut(s)	225, 497
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	172
NlaIII	CATG	5 cut(s)	117, 176, 293, 365, 636
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	285, 303
NsbI	TGCGCA	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	700
PkrI	GCNGC	2 cut(s)	7, 332
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	223, 495
PspGI	CCWGG	2 cut(s)	223, 495
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	10
RsaI	GTAC	3 cut(s)	14, 134, 649
RsaNI	GTAC	3 cut(s)	13, 133, 648
RseI	CAYNNNNRTG	2 cut(s)	261, 294
SaqAI	TTAA	4 cut(s)	213, 488, 597, 615
SatI	GCNGC	2 cut(s)	6, 331
Sau96I	GGNCC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	120, 225, 497
SetI	ASST	9 cut(s)	24, 42, 54, 74, 141, 326, 411, 564, 690
SfaNI	GCATC	1 cut(s)	647
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	186
SmiI	ATTTAAAT	1 cut(s)	489
SmiMI	CAYNNNNRTG	2 cut(s)	261, 294
SmlI	CTYRAG	2 cut(s)	149, 659
SmoI	CTYRAG	2 cut(s)	149, 659
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	3 cut(s)	87, 438, 617
SsiI	CCGC	3 cut(s)	127, 274, 474
SspMI	CTAG	2 cut(s)	308, 693
StyD4I	CCNGG	3 cut(s)	118, 223, 495
StyI	CCWWGG	1 cut(s)	172
SwaI	ATTTAAAT	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	263, 652
TaqI	TCGA	2 cut(s)	186, 245
TasI	AATT	3 cut(s)	87, 438, 617
TatI	WGTACW	1 cut(s)	647
Tru1I	TTAA	4 cut(s)	213, 488, 597, 615
Tru9I	TTAA	4 cut(s)	213, 488, 597, 615
TscAI	CASTG	2 cut(s)	205, 591
TseFI	GTSAC	2 cut(s)	285, 303
TseI	GCWGC	2 cut(s)	5, 330
Tsp45I	GTSAC	2 cut(s)	285, 303
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	205, 591
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	87, 617
XbaI	TCTAGA	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	2 cut(s)	308, 693
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.