Prupe.6G112900_v2.0.a1

Plant self-incompatibility protein S1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
8147751 .. 8148089
339 bp
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UTR
Exon/CDS
Intron
Prupe.6G112900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 339 bp
ATGAAAACTATAAACAATTTTGTAATATTTGTTTTATTTTTGCTTTGCCAACAAGCTTGCGGGTGGCCGTGGCCATGGCCAAGAGTGACTGTCCGTATTACCAACAAGCTAGGGGGCGGCCAAAGCATGAACATTCCCTGCAAATCTGCAGACAATTATCTTGGCTTGCAAATTCTGGCAGACGATCAAGAAACTAGTTGGAGTTTCGACCCGAATATTTGGCAAACAACACACTTTTATTGCAATGTGCAATGGGGTAACTCATGTTTGCATCAATGTAAATATGTGATAAACGAGAACCATCAAAACCAGCGGCAAGAATATCCTTTAACAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

13.1

Weight (kDa)

6.79

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 60, 117, 313
AcoI YGGCCR 4 cut(s) 65, 71, 77, 118
AcsI RAATTY 1 cut(s) 171
AhlI ACTAGT 1 cut(s) 194
AluBI AGCT 2 cut(s) 56, 109
AluI AGCT 2 cut(s) 56, 109
AoxI GGCC 4 cut(s) 65, 71, 77, 118
ApoI RAATTY 1 cut(s) 171
BalI TGGCCA 2 cut(s) 73, 79
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 52
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 2 cut(s) 110, 195
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 118, 314
BlsI GCNGC 2 cut(s) 119, 315
BmsI GCATC 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 68, 74
Bse3DI GCAATG 2 cut(s) 250, 257
BseDI CCNNGG 2 cut(s) 68, 74
BseMI GCAATG 2 cut(s) 250, 257
BshFI GGCC 4 cut(s) 67, 73, 79, 120
BsnI GGCC 4 cut(s) 67, 73, 79, 120
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 3 cut(s) 60, 117, 313
BspANI GGCC 4 cut(s) 67, 73, 79, 120
BspMAI CTGCAG 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 250, 257
BssECI CCNNGG 2 cut(s) 68, 74
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 58, 167
BstDSI CCRYGG 2 cut(s) 68, 74
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstSFI CTRYAG 1 cut(s) 147
BsuRI GGCC 4 cut(s) 67, 73, 79, 120
BtgI CCRYGG 2 cut(s) 68, 74
Cac8I GCNNGC 2 cut(s) 58, 167
CviAII CATG 3 cut(s) 75, 127, 264
CviJI RGCY 7 cut(s) 56, 67, 73, 79, 109, 120, 165
CviKI_1 RGCY 7 cut(s) 56, 67, 73, 79, 109, 120, 165
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 4 cut(s) 65, 71, 77, 118
Eco130I CCWWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 78, 130, 267
FaiI YATR 5 cut(s) 11, 76, 128, 265, 285
FatI CATG 3 cut(s) 74, 126, 263
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 118, 314
Fsp4HI GCNGC 2 cut(s) 118, 314
FspBI CTAG 2 cut(s) 110, 195
GluI GCNGC 2 cut(s) 118, 314
HaeIII GGCC 4 cut(s) 67, 73, 79, 120
Hin1II CATG 3 cut(s) 78, 130, 267
HindIII AAGCTT 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 6 cut(s) 141, 149, 169, 243, 250, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 3 cut(s) 78, 130, 267
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 3 cut(s) 151, 161, 323
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 110, 195
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 85, 257
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MlsI TGGCCA 2 cut(s) 73, 79
MluCI AATT 3 cut(s) 16, 154, 171
MluNI TGGCCA 2 cut(s) 73, 79
MmeI TCCRAC 1 cut(s) 179
Mox20I TGGCCA 2 cut(s) 73, 79
MscI TGGCCA 2 cut(s) 73, 79
MseI TTAA 1 cut(s) 329
Msp20I TGGCCA 2 cut(s) 73, 79
MspA1I CMGCKG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 123
NcoI CCATGG 1 cut(s) 74
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 78, 130, 267
NmuCI GTSAC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 119, 315
PstI CTGCAG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 2 cut(s) 118, 314
Sau3AI GATC 1 cut(s) 184
SetI ASST 3 cut(s) 58, 111, 338
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 3 cut(s) 16, 154, 171
SsiI CCGC 3 cut(s) 60, 117, 313
SspI AATATT 2 cut(s) 27, 217
SspMI CTAG 2 cut(s) 110, 195
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 207
TasI AATT 3 cut(s) 16, 154, 171
TauI GCSGC 2 cut(s) 120, 316
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 143
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 1 cut(s) 171
XspI CTAG 2 cut(s) 110, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.