Prupe.6G119700_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
8857239 .. 8858147
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G119700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 795 bp
ATGGCACTTCCAAAGCTTAAGCTCATCTTCACCCTTTTCTTCCTTCAAGCCCTCCTCACATCCACCACATCAATCCAAGCAGCCCCAGCAAACTCAGATCTCTTTAGAGAATACATAGGAGCTGAATTCGTCAATGTCAAGTTTTCTGATGTCCCCATTAACCCAAATACTATGACACCTCAGGCTCTTCCCCCCACCAATGGAAAATTCAATGTCTTTTGGGACTCTGATAACCTTAGCCCTTCCCAAGTTTCCTCCATCAAAAATCAGCATTCAAATGTCAAAGTGGCCTTCAGCCTAGGAGGGGACAGTGTGAATAGTGGCTCTGCTTACTTAAAGCCTTCCTCAATTGACCTGTGGGTTTCTAATGCTGTTTCTTCAGTCACAAGCATCATCCCACAGTACAATTTGGATGGAATTGACAATGATTACGAGCATTTTAGAGCAGACACGATACCTTTTTCTGACTGCATTGGAAGGCTTATAACAACCCTCAAGAACACTGGAGTGATCTCATTTGCTTCCATTGCTCCATTTGATGATGACCAAGTTCAGAGCCACTACCTGGCTTTGTGGAAAAGCTATGGCCATTTGATAGACTACGTGAATTTCCAGTTTTACGCATATGATCAGGGCACCACAGTGGCTGAGTTCATCGATTATTTCAAGACGCAAAGCTCCAACCAATTACAATGTGAGCTAAAACTTCATGGAATCTTTGTTTGGTCTGCAGATGACTCAAAGAAAATCGGTTTCCGCTATGAAAAGCAATCACAAGCTCTCTTGACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

265

Amino Acids

29.46

Weight (kDa)

5.28

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 635
AccB7I CCANNNNNTGG 1 cut(s) 565
AciI CCGC 1 cut(s) 757
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 3 cut(s) 125, 206, 607
AcuI CTGAAG 2 cut(s) 277, 363
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 200, 304, 565
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 4 cut(s) 47, 211, 276, 667
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 4 cut(s) 191, 223, 706, 738
AleI CACNNNNGTG 2 cut(s) 506, 641
AluBI AGCT 7 cut(s) 16, 22, 122, 582, 678, 700, 779
AluI AGCT 7 cut(s) 16, 22, 122, 582, 678, 700, 779
AlwNI CAGNNNCTG 1 cut(s) 647
AoxI GGCC 2 cut(s) 288, 586
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 125, 206, 607
AspA2I CCTAGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 22
AvrII CCTAGG 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 638
BalI TGGCCA 1 cut(s) 588
BanI GGYRCC 1 cut(s) 635
BbvI GCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 266, 407
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 1 cut(s) 628
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 729
BfrI CTTAAG 1 cut(s) 17
BglII AGATCT 1 cut(s) 97
BisI GCNGC 1 cut(s) 81
BlnI CCTAGG 1 cut(s) 298
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 604
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 304, 565
Bse1I ACTGG 2 cut(s) 508, 613
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 566
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 3 cut(s) 59, 393, 418
BseLI CCNNNNNNNGG 3 cut(s) 200, 304, 565
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 3 cut(s) 108, 194, 639
BseNI ACTGG 2 cut(s) 508, 613
BseRI GAGGAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 290, 588
BshNI GGYRCC 1 cut(s) 635
BshVI ATCGAT 1 cut(s) 657
BslFI GGGAC 3 cut(s) 137, 236, 320
BslI CCNNNNNNNGG 3 cut(s) 200, 304, 565
BsmFI GGGAC 3 cut(s) 137, 236, 320
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 290, 588
Bsp1286I GDGCHC 1 cut(s) 638
Bsp143I GATC 3 cut(s) 97, 510, 628
BspACI CCGC 1 cut(s) 757
BspANI GGCC 2 cut(s) 290, 588
BspCNI CTCAG 3 cut(s) 107, 193, 640
BspDI ATCGAT 1 cut(s) 657
BspLI GGNNCC 1 cut(s) 637
BspMAI CTGCAG 1 cut(s) 733
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 635
BspTI CTTAAG 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 2 cut(s) 508, 613
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 3 cut(s) 97, 510, 628
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 311, 402, 643
Bst6I CTCTTC 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 604
BstDEI CTNAG 4 cut(s) 94, 180, 236, 648
BstF5I GGATG 3 cut(s) 59, 393, 418
BstKTI GATC 3 cut(s) 100, 513, 631
BstMBI GATC 3 cut(s) 97, 510, 628
BstMWI GCNNNNNNNGC 2 cut(s) 86, 527
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 729
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 657
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 2 cut(s) 290, 588
BsuTUI ATCGAT 1 cut(s) 657
BtsCI GGATG 3 cut(s) 59, 393, 418
BtsIMutI CAGTG 3 cut(s) 316, 501, 648
CaiI CAGNNNCTG 1 cut(s) 647
ClaI ATCGAT 1 cut(s) 657
CseI GACGC 1 cut(s) 679
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 710
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 4 cut(s) 94, 180, 236, 648
DpnI GATC 3 cut(s) 99, 512, 630
DpnII GATC 3 cut(s) 97, 510, 628
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 277, 363
Eco81I CCTNAGG 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 1 cut(s) 713
FaiI YATR 8 cut(s) 116, 173, 485, 585, 625, 627, 711, 762
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 3 cut(s) 137, 236, 320
FatI CATG 1 cut(s) 709
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 46, 380, 425
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 2 cut(s) 290, 588
HgaI GACGC 1 cut(s) 679
Hin1II CATG 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 224, 714, 737
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 5 cut(s) 97, 148, 229, 466, 555
Hpy188III TCNNGA 3 cut(s) 496, 667, 784
HpyAV CCTTC 5 cut(s) 53, 252, 301, 351, 471
HpyCH4III ACNGT 3 cut(s) 311, 402, 643
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 2 cut(s) 471, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 527
HpyF3I CTNAG 4 cut(s) 94, 180, 236, 648
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 3 cut(s) 97, 510, 628
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 119, 535, 683
LpnPI CCDG 8 cut(s) 99, 167, 368, 489, 551, 578, 617, 626
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 99, 512, 630
MboI GATC 3 cut(s) 97, 510, 628
MboII GAAGA 4 cut(s) 19, 31, 179, 369
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 638
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 7 cut(s) 125, 206, 348, 406, 417, 607, 686
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 2 cut(s) 218, 731
MmeI TCCRAC 1 cut(s) 705
MnlI CCTC 7 cut(s) 62, 65, 189, 265, 296, 355, 503
Mox20I TGGCCA 1 cut(s) 588
MscI TGGCCA 1 cut(s) 588
MseI TTAA 3 cut(s) 18, 159, 335
MslI CAYNNNNRTG 3 cut(s) 276, 506, 641
Msp20I TGGCCA 1 cut(s) 588
MspCI CTTAAG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 566
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 86, 527
NdeI CATATG 1 cut(s) 625
NdeII GATC 3 cut(s) 97, 510, 628
NlaIII CATG 1 cut(s) 713
NlaIV GGNNCC 1 cut(s) 637
NmuCI GTSAC 1 cut(s) 382
OliI CACNNNNGTG 2 cut(s) 506, 641
PciSI GCTCTTC 1 cut(s) 192
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 714
PflMI CCANNNNNTGG 1 cut(s) 565
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 218, 731
PpsI GAGTC 2 cut(s) 218, 731
Ppu21I YACGTR 1 cut(s) 604
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 637
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 647
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 3 cut(s) 276, 506, 641
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 18, 159, 335
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 97, 510, 628
SchI GAGTC 2 cut(s) 218, 731
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 638
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 729
SmiMI CAYNNNNRTG 3 cut(s) 276, 506, 641
SmlI CTYRAG 2 cut(s) 17, 494
SmoI CTYRAG 2 cut(s) 17, 494
Sse9I AATT 7 cut(s) 125, 206, 348, 406, 417, 607, 686
SsiI CCGC 1 cut(s) 757
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 311, 402, 643
TaiI ACGT 1 cut(s) 606
TaqI TCGA 1 cut(s) 657
TasI AATT 7 cut(s) 125, 206, 348, 406, 417, 607, 686
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 1 cut(s) 714
Tru1I TTAA 3 cut(s) 18, 159, 335
Tru9I TTAA 3 cut(s) 18, 159, 335
TscAI CASTG 3 cut(s) 316, 508, 648
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 643, 698, 777
TspRI CASTG 3 cut(s) 316, 508, 648
Van91I CCANNNNNTGG 1 cut(s) 565
Vha464I CTTAAG 1 cut(s) 17
XapI RAATTY 3 cut(s) 125, 206, 607
XmaJI CCTAGG 1 cut(s) 298
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.