Prupe.6G124800_v2.0.a1

protein histidine kinase binding

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
9350903 .. 9357277
6375 bp
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UTR
Exon/CDS
Intron
Prupe.6G124800.2_v2.0.a1.CDS.3

Sequence Viewer

Length: 450 bp
ATGGCTTTACCAATTCTGAAAGGACTTCTCAGAGGATATGTGCAGTCACTCTTTAATGAGGGTATCGTGAATAATCACTTTTCACAGATTCAGACCTTGAAGAGTGATGCAGATCCTGATTGTGCTGTGCGGCTGATCAATATATATTTGCTTGATGTTGAAAGAATGTTATCAGAATTGACATGCCTCAGTGATTTACCTGATGTTGATTTTTCCAAATTGGCTACACTGGCTCGCAGTATAGAGGAGAAAAGCTCATTAGTTGGTGCGGAACATGTGAGAAGTGCATGTGCTGATCTCATTCAGGCTTGCGAACGGATGCAGAAGCAAAATTTCCTCCGAGCCCTAGGTTGGATAAAGAATGAATTCGCTCATACCCGAAACAAGCTGGACTCCTTTGTTCAGATGGAGAGGAGGATTTTCAGGGTCGAAGGCAGAGAAGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

6.83

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029022)

Species Orthologous Gene IDs
prunus_persica Prupe.6G124800_v2.0.a1 Prupe.6G124800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 269
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 2 cut(s) 331, 365
AfiI CCNNNNNNNGG 1 cut(s) 351
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 2 cut(s) 100, 161
AluBI AGCT 2 cut(s) 255, 388
AluI AGCT 2 cut(s) 255, 388
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 116
ApoI RAATTY 2 cut(s) 331, 365
Asp700I GAANNNNTTC 1 cut(s) 365
AspA2I CCTAGG 1 cut(s) 346
AvrII CCTAGG 1 cut(s) 346
BanII GRGCYC 1 cut(s) 346
BccI CCATC 1 cut(s) 400
BclI TGATCA 1 cut(s) 135
BfaI CTAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 131
BlnI CCTAGG 1 cut(s) 346
BlsI GCNGC 1 cut(s) 132
BmsI GCATC 2 cut(s) 97, 309
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 43, 202
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 2 cut(s) 260, 427
BsgI GTGCAG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 112, 135, 295
BspACI CCGC 2 cut(s) 130, 269
BspCNI CTCAG 2 cut(s) 42, 201
BspPI GGATC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 3 cut(s) 112, 135, 295
BssT1I CCWWGG 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 235, 310
BstDEI CTNAG 2 cut(s) 29, 188
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 3 cut(s) 115, 138, 298
BstMBI GATC 3 cut(s) 112, 135, 295
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 3 cut(s) 186, 278, 291
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 196, 227
Cac8I GCNNGC 2 cut(s) 235, 310
CaiI CAGNNNCTG 1 cut(s) 116
CviAII CATG 3 cut(s) 183, 275, 288
CviJI RGCY 8 cut(s) 5, 133, 224, 233, 255, 308, 344, 388
CviKI_1 RGCY 8 cut(s) 5, 133, 224, 233, 255, 308, 344, 388
DdeI CTNAG 2 cut(s) 29, 188
DpnI GATC 3 cut(s) 114, 137, 297
DpnII GATC 3 cut(s) 112, 135, 295
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 3 cut(s) 186, 278, 291
FaiI YATR 8 cut(s) 39, 143, 145, 184, 242, 276, 289, 375
FatI CATG 3 cut(s) 182, 274, 287
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 347
GluI GCNGC 1 cut(s) 131
Hin1II CATG 3 cut(s) 186, 278, 291
HinfI GANTC 2 cut(s) 88, 392
Hpy188I TCNGA 6 cut(s) 18, 32, 93, 175, 341, 405
Hpy188III TCNNGA 2 cut(s) 67, 116
HpyAV CCTTC 1 cut(s) 425
HpyCH4V TGCA 4 cut(s) 43, 110, 287, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 29, 188
Hsp92II CATG 3 cut(s) 186, 278, 291
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 3 cut(s) 112, 135, 295
LpnPI CCDG 6 cut(s) 129, 213, 215, 290, 374, 409
LweI GCATC 2 cut(s) 97, 309
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 114, 137, 297
MboI GATC 3 cut(s) 112, 135, 295
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 5 cut(s) 12, 176, 218, 331, 365
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 7 cut(s) 26, 52, 197, 238, 347, 405, 408
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 3 cut(s) 112, 135, 295
NlaIII CATG 3 cut(s) 186, 278, 291
NmuCI GTSAC 1 cut(s) 45
NspI RCATGY 3 cut(s) 186, 278, 291
PciI ACATGT 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PscI ACATGT 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 112
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 3 cut(s) 112, 135, 295
SchI GAGTC 1 cut(s) 386
SduI GDGCHC 1 cut(s) 346
SetI ASST 5 cut(s) 98, 202, 257, 352, 390
SfaNI GCATC 2 cut(s) 97, 309
Sse9I AATT 5 cut(s) 12, 176, 218, 331, 365
SsiI CCGC 2 cut(s) 130, 269
SspMI CTAG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 346
TaqI TCGA 1 cut(s) 429
TasI AATT 5 cut(s) 12, 176, 218, 331, 365
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 2 cut(s) 196, 234
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 378
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 2 cut(s) 196, 234
XapI RAATTY 2 cut(s) 331, 365
XceI RCATGY 3 cut(s) 186, 278, 291
XmaJI CCTAGG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.