Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9890002 .. 9890355

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G127800.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGTGTTACGGCACAAAGCTCTTGCGGCAATTTCACAATTTTCTCTTCCAACTGCCCAACTTCAGCTCTCAATTCCTGCAATGAAAACAAGCTTGTCACCGCATGGTGGCCTAGCTCTGTCAACAAGGTCTTCCCTTCTTCCCAAGAGACTTCCGCCAAAGAGGAGGCCAAGAAGATGAGAAAGATGCTCCCCAACTTCATGAAGCCTGAGGCTCTCCAACGATACATAGGGATCATGGACACTGTTGCCCAGAGGCACTTTGCTGATGGTTGGGAAAACAGGAAGGAAGTTGAAGTCTTCCCCCTTGCCAAGAACTACACCTTTTTGGCTTGCTGCACGGCTGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

8.57

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	27, 102, 156
AclWI	GGATC	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	4 cut(s)	21, 68, 94, 117
AluI	AGCT	4 cut(s)	21, 68, 94, 117
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	110, 168
ApeKI	GCWGC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	91
AxyI	CCTNAGG	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	124, 292
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	28, 337
BlsI	GCNGC	2 cut(s)	29, 338
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	2 cut(s)	124, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	112, 170
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	112, 170
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	3 cut(s)	27, 102, 156
BspANI	GGCC	2 cut(s)	112, 170
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	88
BssMI	GATC	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	2 cut(s)	124, 292
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	112, 170
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	334
CciI	TCATGA	1 cut(s)	201
CviAII	CATG	3 cut(s)	105, 202, 238
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	108, 205, 241
FaiI	YATR	4 cut(s)	106, 203, 230, 239
FatI	CATG	3 cut(s)	104, 201, 237
Fnu4HI	GCNGC	2 cut(s)	28, 337
Fsp4HI	GCNGC	2 cut(s)	28, 337
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	28, 337
HaeIII	GGCC	2 cut(s)	112, 170
Hin1II	CATG	3 cut(s)	108, 205, 241
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	92
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	147, 280
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	81, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	108, 205, 241
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	4 cut(s)	91, 222, 266, 268
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	7, 97
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	5 cut(s)	39, 124, 132, 187, 292
MluCI	AATT	3 cut(s)	31, 39, 73
MmeI	TCCRAC	2 cut(s)	75, 244
MnlI	CCTC	4 cut(s)	157, 160, 205, 249
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	3 cut(s)	108, 205, 241
NmuCI	GTSAC	1 cut(s)	97
PagI	TCATGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	29, 338
SatI	GCNGC	2 cut(s)	28, 337
Sau3AI	GATC	1 cut(s)	234
SetI	ASST	6 cut(s)	23, 70, 96, 119, 132, 326
SfaNI	GCATC	1 cut(s)	177
Sse9I	AATT	3 cut(s)	31, 39, 73
SsiI	CCGC	3 cut(s)	27, 102, 156
SspMI	CTAG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	3 cut(s)	31, 39, 73
TauI	GCSGC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	99, 190, 218
TspRI	CASTG	1 cut(s)	250
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.