Prupe.6G128800_v2.0.a1

ATPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
9992092 .. 9992597
506 bp
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UTR
Exon/CDS
Intron
Prupe.6G128800.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 255 bp
ATGGTGATTGTACAACTCCTGGCCATCAAATTGCTGCAATCCCTTTTGTCTTTCTGCACGAGCTTCTGGAACTTGTTCTCCGGTTTCCTCATTCCCAGATCGCTAATCCCAGTGTGGTGGAGGTGGTACTACTGGGGGTCTCCAATTGCTTGGACAATCTATGGCATCTTTGCATCTCCATTTGGAGACCTTAAGACTGTAATTGATACTCCTAAAGGACCTCAGAGAGTGGATCTATCTATTCCTCAAGGATAA

Protein Analysis

85

Amino Acids

9.66

Weight (kDa)

9.43

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 21
AfaI GTAC 2 cut(s) 12, 128
AflII CTTAAG 1 cut(s) 191
AjnI CCWGG 1 cut(s) 18
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 144, 180
AlwI GGATC 1 cut(s) 240
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 23
BauI CACGAG 1 cut(s) 58
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 144, 180
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 2 cut(s) 104, 142
BmsI GCATC 2 cut(s) 174, 182
BmuI ACTGGG 2 cut(s) 104, 142
BpuEI CTTGAG 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 144, 180
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse1I ACTGG 2 cut(s) 110, 137
BseBI CCWGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 110, 137
BseXI GCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 144, 180
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 2 cut(s) 144, 180
Bsp1407I TGTACA 1 cut(s) 10
Bsp143I GATC 2 cut(s) 98, 232
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 240
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 2 cut(s) 144, 180
BsrGI TGTACA 1 cut(s) 10
BsrI ACTGG 2 cut(s) 110, 137
BssMI GATC 2 cut(s) 98, 232
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 199
BstAFI CTTAAG 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 222
BstKTI GATC 2 cut(s) 101, 235
BstMAI GTCTC 2 cut(s) 144, 180
BstMBI GATC 2 cut(s) 98, 232
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 2 cut(s) 117, 150
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 11, 127
CviJI RGCY 2 cut(s) 23, 63
CviKI_1 RGCY 2 cut(s) 23, 63
CviQI GTAC 2 cut(s) 11, 127
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 100, 234
DpnII GATC 2 cut(s) 98, 232
EaeI YGGCCR 1 cut(s) 21
Eco31I GGTCTC 2 cut(s) 144, 180
Eco47I GGWCC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 81
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 37, 57, 173
HpyF3I CTNAG 1 cut(s) 222
Kzo9I GATC 2 cut(s) 98, 232
LpnPI CCDG 7 cut(s) 5, 32, 52, 94, 109, 118, 123
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 2 cut(s) 174, 182
MalI GATC 2 cut(s) 100, 234
MboI GATC 2 cut(s) 98, 232
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 3 cut(s) 29, 144, 201
MluNI TGGCCA 1 cut(s) 23
MnlI CCTC 4 cut(s) 98, 114, 231, 255
Mox20I TGGCCA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 23
MseI TTAA 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 20
NdeII GATC 2 cut(s) 98, 232
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 36
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 12, 128
RsaNI GTAC 2 cut(s) 11, 127
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 98, 232
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 20
SetI ASST 4 cut(s) 65, 125, 192, 223
SfaNI GCATC 2 cut(s) 174, 182
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 191, 246
SmoI CTYRAG 2 cut(s) 191, 246
Sse9I AATT 3 cut(s) 29, 144, 201
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 199
TasI AATT 3 cut(s) 29, 144, 201
TatI WGTACW 1 cut(s) 10
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 34
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.