Prupe.6G129900_v2.0.a1

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
10094080 .. 10094651
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G129900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 375 bp
ATGGTGGACTTTGCATTGCCTGAGGATCTGAAGATGAAAATAGTAGAGTTAGTAGGTTCCAATGTGAAACCGACGCTCGTTCGCGATTTGACGTTTTGTGAGCACGATTTTGGCAATCGTTTGGTGCTTGTGTTACCTGAGTCTTTGTCTGGCGTGCCAATCAATCTGAAGAAAAAGCAGTCGCTTACCGTACGGATGATCGGACCCTCGCTTAATGTGTTTGATATGACTCTTAGTAGGAGTGCAGATGGTGGACATGTTTTAAAAGATTGGAACTCAGTGATGCAAATAGAGGATTTCGAGGAAGGAGACACTGTGTATCTATGGTCCTTCAAAGACCCTGGCGACATTCTTTGGTTTGTTATGCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

125

Amino Acids

14.02

Weight (kDa)

4.9

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AclWI GGATC 1 cut(s) 33
AcuI CTGAAG 2 cut(s) 50, 188
AfaI GTAC 1 cut(s) 192
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 203, 327
AvaII GGWCC 2 cut(s) 203, 327
AxyI CCTNAGG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 203, 327
BmgT120I GGNCC 2 cut(s) 203, 327
BmiI GGNNCC 2 cut(s) 58, 205
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 12, 129, 291
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 105
BsiWI CGTACG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 25, 198
Bsp68I TCGCGA 1 cut(s) 84
BspCNI CTCAG 3 cut(s) 13, 130, 290
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 58, 205
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 2 cut(s) 25, 198
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 190, 316
BstC8I GCNNGC 2 cut(s) 155, 369
BstDEI CTNAG 4 cut(s) 21, 138, 233, 277
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 2 cut(s) 28, 201
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 2 cut(s) 25, 198
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 2 cut(s) 260, 371
BstSCI CCNGG 1 cut(s) 340
BstUI CGCG 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 285, 312
BtuMI TCGCGA 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 155, 369
Cfr13I GGNCC 2 cut(s) 203, 327
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 257, 368
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 4 cut(s) 21, 138, 233, 277
DpnI GATC 2 cut(s) 27, 200
DpnII GATC 2 cut(s) 25, 198
DraI TTTAAA 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 203, 327
Eco57I CTGAAG 2 cut(s) 50, 188
Eco81I CCTNAGG 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 340
EcoT22I ATGCAT 2 cut(s) 369, 373
FaeI CATG 2 cut(s) 260, 371
FaiI YATR 6 cut(s) 227, 258, 325, 365, 369, 373
FatI CATG 2 cut(s) 256, 367
FokI GGATG 1 cut(s) 208
HgaI GACGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 260, 371
HinfI GANTC 2 cut(s) 140, 229
Hpy166II GTNNAC 2 cut(s) 7, 254
Hpy188I TCNGA 3 cut(s) 30, 168, 203
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 7, 254
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 299, 340
HpyCH4III ACNGT 2 cut(s) 190, 316
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 14, 245, 286, 367, 371
HpyF3I CTNAG 4 cut(s) 21, 138, 233, 277
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 2 cut(s) 260, 371
Kzo9I GATC 2 cut(s) 25, 198
LpnPI CCDG 5 cut(s) 33, 135, 150, 327, 354
LweI GCATC 1 cut(s) 273
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 132
MalI GATC 2 cut(s) 27, 200
MboI GATC 2 cut(s) 25, 198
MboII GAAGA 2 cut(s) 43, 181
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 105
MlyI GAGTC 2 cut(s) 149, 223
MnlI CCTC 4 cut(s) 16, 217, 286, 295
Mph1103I ATGCAT 2 cut(s) 369, 373
MseI TTAA 2 cut(s) 213, 263
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 84
NdeII GATC 2 cut(s) 25, 198
NlaIII CATG 2 cut(s) 260, 371
NlaIV GGNNCC 2 cut(s) 58, 205
NruI TCGCGA 1 cut(s) 84
NsiI ATGCAT 2 cut(s) 369, 373
NspI RCATGY 2 cut(s) 260, 371
PaeI GCATGC 1 cut(s) 371
PciI ACATGT 1 cut(s) 256
Pfl23II CGTACG 1 cut(s) 190
PleI GAGTC 2 cut(s) 148, 223
PpsI GAGTC 2 cut(s) 148, 223
PscI ACATGT 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspLI CGTACG 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 58, 205
PspPI GGNCC 2 cut(s) 203, 327
PsuI RGATCY 1 cut(s) 25
RruI TCGCGA 1 cut(s) 84
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 213, 263
Sau3AI GATC 2 cut(s) 25, 198
Sau96I GGNCC 2 cut(s) 203, 327
SchI GAGTC 2 cut(s) 149, 223
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 105
SetI ASST 3 cut(s) 58, 95, 139
SfaNI GCATC 1 cut(s) 273
SinI GGWCC 2 cut(s) 203, 327
SphI GCATGC 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 190, 316
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 300
Tru1I TTAA 2 cut(s) 213, 263
Tru9I TTAA 2 cut(s) 213, 263
TscAI CASTG 2 cut(s) 285, 319
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 2 cut(s) 285, 319
VpaK11BI GGWCC 2 cut(s) 203, 327
XceI RCATGY 2 cut(s) 260, 371
Zsp2I ATGCAT 2 cut(s) 369, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.