Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10748013 .. 10749816

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G135100.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGGTACTCTTATGAGGCTATTTTCACCACCACCAGCAACCCAGAGCTGCCAATTTTTTCATTCATTCAATCCTCCATTTTCATTTCCAAGAACCTGTGGCACATCTTCAAGAAATACTCCTTTCAAAGCCCAGAGCAGCGAACGTGGAAATTTTCTTGATTTAAAACCGGAGGCAAAACCTGAATTCTTAGATTTCGACATCCCCCAGTTCGACACATCTACTAGGTCCTCCTCAGACGTGATCATCATCGGCACTGGCCCTGCCGGGCTTCGCCTTGCAGAGCAAGTGTCACAGCATGGCATTAAGGTATGTTGTGTTGATCCTTCACCGCAATCTTTGTGGCCAAATACCTATGGCGTTTGGGTTGATGAGTTTGAGAGCTTGCAGCTTGAGAGTTGCTTAGAAAAAACATGGCCTAGGTCTTGCTTTTATATTGATGAAGACAATGTCAAGTATATAGACCGCCCTTTCGGTCGAATTAGCAGGAAGAAATTCAAGACTTTGCTAATGGAGAGGTGCCTCTCTAATGATGTCAAGTTTCATAAGGCCAAGGTTTTGAAAATTGAGCACCAAGAGTTTGAATCTTCGATATTCTGTGACGATGGCAATGAACTCAAGGCAAGCCTAATTGTTGATGCTAGTGGGTTTGCAAGCACTTTCATGGAGTATGACAAACCAAGGAACCATGGGTATCAGACTGGCCATGGCATTTTGGCTGAAGTGGATTTTCACCCTTTTGACTTGGATAAGGTTGTTCAGTTGGATTGGAGAGACTCACATCTCAGAAATGAGCCTTCAATGCTCACTAGAAATTCAAGATTTCCAACTTTTCTCTTTGCCATGCCATTTGATTCAAGCCTAATATATTTGATGGAAACTTCATTGGTTGGTAGGCCAGTGCTGTCTTATGAGGAGGTGAAGAAGAGAATGGTTGCAAGGCTAAGGCATTTGGGAATTAGAGTGAAGAGGGTTTTGGAGGCTGAGAAGTGTTTGATCCCAATGGGAGGCCCTCTTCCTCGGATGTCTCAAGAGGTGATGGCTATGGGAGGAACTTCCGGGCTTGTCAATCCTTCAGCCGGGTACATGGTGGCGTCGGCCATGGCCCTAGCCCCGGTGCTAGCCGAGGCCATTGTGCAGTGCCTTGGCTCGACCCCAATGATCCGAGGGCAGCCACTTTATGATAGAGTGTGGAAGGGATTGTGGCCAATTGAGAGGAGATGTGTTAGGGAGTTTTACTCTTTTGGGATGGAGACTTTGTTGAAGCTTGATCTGAATGAGACTCGAAGGTTCTTTGATGCTTTCTTTGACTTGGATCCGTATTACTTGAACGGATATCTTTCATCAAGGTTGTCCCCAACAGAGCTTGCCTTTTTCAGTTTATCTCTGTTTGGCAATGCCTCTGTTTCATCTAGAGTTGAACTTCTTACAAAGTCTGCTGTACCCTTCGTTAAAATGATAGGTAATCTAGCACTTGAAGCAAAACAATATTATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009687 GO:0009688 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0034020 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl Trp_halogenase

Protein Analysis

500

Amino Acids

56.64

Weight (kDa)

7.09

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	519
AciI	CCGC	2 cut(s)	332, 466
AclWI	GGATC	5 cut(s)	317, 991, 1156, 1310, 1323
AcoI	YGGCCR	4 cut(s)	344, 703, 1098, 1205
AcsI	RAATTY	4 cut(s)	151, 185, 494, 814
AcuI	CTGAAG	2 cut(s)	741, 1059
AcyI	GRCGYC	1 cut(s)	1094
AfaI	GTAC	3 cut(s)	7, 1085, 1443
AfiI	CCNNNNNNNGG	3 cut(s)	1007, 1079, 1114
AjiI	CACGTC	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	5 cut(s)	48, 384, 391, 1267, 1366
AluI	AGCT	5 cut(s)	48, 384, 391, 1267, 1366
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	4 cut(s)	768, 1032, 1247, 1274
AlwI	GGATC	5 cut(s)	317, 991, 1156, 1310, 1323
ApeKI	GCWGC	4 cut(s)	48, 138, 388, 1171
ApoI	RAATTY	4 cut(s)	151, 185, 494, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
Asp700I	GAANNNNTTC	1 cut(s)	494
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	4 cut(s)	228, 260, 1010, 1105
AsuC2I	CCSGG	4 cut(s)	268, 1060, 1081, 1115
AsuHPI	GGTGA	5 cut(s)	18, 321, 725, 931, 1048
AsuNHI	GCTAGC	1 cut(s)	1120
AvaII	GGWCC	1 cut(s)	228
AvrII	CCTAGG	1 cut(s)	419
BalI	TGGCCA	3 cut(s)	346, 705, 1207
BamHI	GGATCC	1 cut(s)	1315
BanI	GGYRCC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	35, 150, 400, 1183
BccI	CCATC	4 cut(s)	599, 868, 1033, 1243
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	4 cut(s)	268, 1060, 1081, 1115
BcoDI	GTCTC	4 cut(s)	768, 1032, 1247, 1274
BfaI	CTAG	8 cut(s)	225, 420, 642, 810, 1109, 1121, 1413, 1469
BisI	GCNGC	4 cut(s)	49, 139, 389, 1172
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	4 cut(s)	50, 140, 390, 1173
Bme1390I	CCNGG	4 cut(s)	268, 1060, 1081, 1115
Bme18I	GGWCC	1 cut(s)	228
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	4 cut(s)	228, 260, 1010, 1105
BmiI	GGNNCC	3 cut(s)	521, 686, 1317
BmrFI	CCNGG	4 cut(s)	268, 1060, 1081, 1115
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	628, 1288
BmtI	GCTAGC	1 cut(s)	1124
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
Bpu10I	CCTNAGC	1 cut(s)	944
BpuEI	CTTGAG	3 cut(s)	413, 602, 1014
BpuMI	CCSGG	4 cut(s)	268, 1060, 1081, 1115
BsaBI	GATNNNNATC	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	1094
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	1244, 1274
Bsc4I	CCNNNNNNNGG	3 cut(s)	1007, 1079, 1114
Bse1I	ACTGG	4 cut(s)	208, 262, 706, 899
Bse3DI	GCAATG	2 cut(s)	616, 1402
Bse8I	GATNNNNATC	1 cut(s)	248
BseGI	GGATG	3 cut(s)	201, 1029, 1254
BseJI	GATNNNNATC	1 cut(s)	248
BseLI	CCNNNNNNNGG	3 cut(s)	1007, 1079, 1114
BseMI	GCAATG	2 cut(s)	616, 1402
BseMII	CTCAG	3 cut(s)	249, 799, 975
BseNI	ACTGG	4 cut(s)	208, 262, 706, 899
BseRI	GAGGAG	3 cut(s)	223, 929, 1231
BseXI	GCAGC	4 cut(s)	35, 150, 400, 1183
BsgI	GTGCAG	1 cut(s)	1157
Bsh1285I	CGRYCG	1 cut(s)	478
BshNI	GGYRCC	1 cut(s)	519
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	5 cut(s)	170, 267, 1059, 1080, 1115
BslFI	GGGAC	1 cut(s)	1339
BslI	CCNNNNNNNGG	3 cut(s)	1007, 1079, 1114
BsmAI	GTCTC	4 cut(s)	768, 1032, 1247, 1274
BsmFI	GGGAC	1 cut(s)	1339
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
Bsp19I	CCATGG	3 cut(s)	688, 706, 1101
BspACI	CCGC	2 cut(s)	332, 466
BspCNI	CTCAG	3 cut(s)	248, 798, 976
BspLI	GGNNCC	3 cut(s)	521, 686, 1317
BspOI	GCTAGC	1 cut(s)	1124
BspPI	GGATC	5 cut(s)	317, 991, 1156, 1310, 1323
BspT107I	GGYRCC	1 cut(s)	519
BsrDI	GCAATG	2 cut(s)	616, 1402
BsrI	ACTGG	4 cut(s)	208, 262, 706, 899
BssMI	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
BssNI	GRCGYC	1 cut(s)	1094
BssT1I	CCWWGG	7 cut(s)	419, 552, 680, 688, 706, 1101, 1144
Bst6I	CTCTTC	3 cut(s)	920, 962, 1020
BstACI	GRCGYC	1 cut(s)	1094
BstC8I	GCNNGC	5 cut(s)	386, 625, 655, 1122, 1368
BstDEI	CTNAG	6 cut(s)	190, 235, 403, 785, 944, 984
BstDSI	CCRYGG	3 cut(s)	688, 706, 1101
BstF5I	GGATG	3 cut(s)	201, 1029, 1254
BstKTI	GATC	6 cut(s)	246, 325, 999, 1164, 1273, 1318
BstMAI	GTCTC	4 cut(s)	768, 1032, 1247, 1274
BstMBI	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	802, 1478
BstSCI	CCNGG	4 cut(s)	266, 1058, 1079, 1113
BstV1I	GCAGC	4 cut(s)	35, 150, 400, 1183
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	1315
BstYI	RGATCY	1 cut(s)	1315
BtgI	CCRYGG	3 cut(s)	688, 706, 1101
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	201, 1029, 1254
BtsI	GCAGTG	1 cut(s)	1145
BtsIMutI	CAGTG	3 cut(s)	255, 906, 1145
Cac8I	GCNNGC	5 cut(s)	386, 625, 655, 1122, 1368
Cfr13I	GGNCC	4 cut(s)	228, 260, 1010, 1105
CseI	GACGC	1 cut(s)	1083
Csp6I	GTAC	3 cut(s)	6, 1084, 1442
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	8 cut(s)	299, 414, 664, 689, 707, 844, 1087, 1102
CviQI	GTAC	3 cut(s)	6, 1084, 1442
DdeI	CTNAG	6 cut(s)	190, 235, 403, 785, 944, 984
DpnI	GATC	6 cut(s)	245, 324, 998, 1163, 1272, 1317
DpnII	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	4 cut(s)	344, 703, 1098, 1205
Eam1104I	CTCTTC	3 cut(s)	920, 962, 1020
EarI	CTCTTC	3 cut(s)	920, 962, 1020
Eco130I	CCWWGG	7 cut(s)	419, 552, 680, 688, 706, 1101, 1144
Eco32I	GATATC	1 cut(s)	1337
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	741, 1059
EcoO109I	RGGNCCY	2 cut(s)	228, 1010
EcoRI	GAATTC	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	1337
EcoT14I	CCWWGG	7 cut(s)	419, 552, 680, 688, 706, 1101, 1144
ErhI	CCWWGG	7 cut(s)	419, 552, 680, 688, 706, 1101, 1144
FaeI	CATG	8 cut(s)	302, 417, 667, 692, 710, 847, 1090, 1105
FaqI	GGGAC	1 cut(s)	1339
FatI	CATG	8 cut(s)	298, 413, 663, 688, 706, 843, 1086, 1101
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	49, 139, 389, 1172
FokI	GGATG	3 cut(s)	188, 1036, 1261
Fsp4HI	GCNGC	4 cut(s)	49, 139, 389, 1172
FspBI	CTAG	8 cut(s)	225, 420, 642, 810, 1109, 1121, 1413, 1469
GluI	GCNGC	4 cut(s)	49, 139, 389, 1172
HapII	CCGG	5 cut(s)	170, 267, 1059, 1080, 1115
HgaI	GACGC	1 cut(s)	1083
Hin1I	GRCGYC	1 cut(s)	1094
Hin1II	CATG	8 cut(s)	302, 417, 667, 692, 710, 847, 1090, 1105
HindIII	AAGCTT	1 cut(s)	1265
HinfI	GANTC	4 cut(s)	584, 776, 854, 1282
HpaII	CCGG	5 cut(s)	170, 267, 1059, 1080, 1115
HphI	GGTGA	5 cut(s)	18, 321, 725, 931, 1048
Hpy188I	TCNGA	6 cut(s)	238, 699, 788, 1023, 1166, 1275
Hpy188III	TCNNGA	6 cut(s)	111, 158, 499, 819, 1031, 1413
Hpy99I	CGWCG	1 cut(s)	1099
HpyAV	CCTTC	6 cut(s)	336, 807, 1083, 1189, 1281, 1456
HpyCH4IV	ACGT	2 cut(s)	145, 240
HpyCH4V	TGCA	5 cut(s)	281, 388, 653, 938, 1138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	802, 1478
HpyF3I	CTNAG	6 cut(s)	190, 235, 403, 785, 944, 984
HpySE526I	ACGT	2 cut(s)	145, 240
Hsp92I	GRCGYC	1 cut(s)	1094
Hsp92II	CATG	8 cut(s)	302, 417, 667, 692, 710, 847, 1090, 1105
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
Lsp1109I	GCAGC	4 cut(s)	35, 150, 400, 1183
LweI	GCATC	2 cut(s)	628, 1288
MaeI	CTAG	8 cut(s)	225, 420, 642, 810, 1109, 1121, 1413, 1469
MaeII	ACGT	2 cut(s)	145, 240
MaeIII	GTNAC	2 cut(s)	291, 599
MalI	GATC	6 cut(s)	245, 324, 998, 1163, 1272, 1317
MboI	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
MboII	GAAGA	8 cut(s)	99, 455, 502, 579, 934, 937, 979, 1007
MfeI	CAATTG	1 cut(s)	1209
MflI	RGATCY	1 cut(s)	1315
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	3 cut(s)	346, 705, 1207
MluNI	TGGCCA	3 cut(s)	346, 705, 1207
MlyI	GAGTC	2 cut(s)	770, 1276
MmeI	TCCRAC	2 cut(s)	744, 851
Mox20I	TGGCCA	3 cut(s)	346, 705, 1207
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	3 cut(s)	346, 705, 1207
MseI	TTAA	3 cut(s)	164, 306, 1452
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	3 cut(s)	346, 705, 1207
MspI	CCGG	5 cut(s)	170, 267, 1059, 1080, 1115
MspR9I	CCNGG	4 cut(s)	268, 1060, 1081, 1115
MunI	CAATTG	1 cut(s)	1209
MwoI	GCNNNNNNNGC	2 cut(s)	802, 1478
NciI	CCSGG	4 cut(s)	268, 1060, 1081, 1115
NcoI	CCATGG	3 cut(s)	688, 706, 1101
NdeII	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
NheI	GCTAGC	1 cut(s)	1120
NlaIII	CATG	8 cut(s)	302, 417, 667, 692, 710, 847, 1090, 1105
NlaIV	GGNNCC	3 cut(s)	521, 686, 1317
NmeAIII	GCCGAG	1 cut(s)	1150
NmuCI	GTSAC	2 cut(s)	291, 599
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	584, 854
PflFI	GACNNNGTC	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	50, 140, 390, 1173
PleI	GAGTC	2 cut(s)	770, 1276
PpsI	GAGTC	2 cut(s)	770, 1276
PpuMI	RGGWCCY	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	521, 686, 1317
PspPI	GGNCC	4 cut(s)	228, 260, 1010, 1105
PspPPI	RGGWCCY	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	1315
PsyI	GACNNNGTC	1 cut(s)	449
RsaI	GTAC	3 cut(s)	7, 1085, 1443
RsaNI	GTAC	3 cut(s)	6, 1084, 1442
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	164, 306, 1452
SatI	GCNGC	4 cut(s)	49, 139, 389, 1172
Sau3AI	GATC	6 cut(s)	243, 322, 996, 1161, 1270, 1315
Sau96I	GGNCC	4 cut(s)	228, 260, 1010, 1105
SchI	GAGTC	2 cut(s)	770, 1276
ScrFI	CCNGG	4 cut(s)	268, 1060, 1081, 1115
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	2 cut(s)	628, 1288
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	3 cut(s)	392, 617, 1029
SmoI	CTYRAG	3 cut(s)	392, 617, 1029
SsiI	CCGC	2 cut(s)	332, 466
SspI	AATATT	1 cut(s)	1490
SspMI	CTAG	8 cut(s)	225, 420, 642, 810, 1109, 1121, 1413, 1469
StyD4I	CCNGG	4 cut(s)	266, 1058, 1079, 1113
StyI	CCWWGG	7 cut(s)	419, 552, 680, 688, 706, 1101, 1144
TaiI	ACGT	2 cut(s)	148, 243
TaqI	TCGA	6 cut(s)	198, 213, 478, 590, 1151, 1285
TaqII	GACCGA	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	584, 854
Tru1I	TTAA	3 cut(s)	164, 306, 1452
Tru9I	TTAA	3 cut(s)	164, 306, 1452
TscAI	CASTG	3 cut(s)	262, 906, 1145
TseFI	GTSAC	2 cut(s)	291, 599
TseI	GCWGC	4 cut(s)	48, 138, 388, 1171
Tsp45I	GTSAC	2 cut(s)	291, 599
TspGWI	ACGGA	2 cut(s)	1308, 1347
TspRI	CASTG	3 cut(s)	262, 906, 1145
Tth111I	GACNNNGTC	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	4 cut(s)	151, 185, 494, 814
XbaI	TCTAGA	1 cut(s)	1412
XmaJI	CCTAGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	8 cut(s)	225, 420, 642, 810, 1109, 1121, 1413, 1469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.