Prupe.6G136600_v2.0.a1

spliceosomal complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
11022965 .. 11024072
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G136600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 399 bp
ATGTCTCCATGGAACCTTCCTCCTTTTTTTGTGTCTCTTGAGGCTGCAACTTTCTATCACGAAGTTGTTTCCAAGAGGAAGTTTGTTGCTGAGAGATCTTACATGTTAGATGCTCTTCCTACAAAGGCATGGTGTGGTGCATCTCAACTATTCACGCACTATCACCTTCACACCCTCAATGCCATTTCAAGGGTGCTTTTTTTGTACTTGACTGAACACATGCTTTATATTTCTCATGCATTGCCAAAGGTAATTCTCACATTACATTCTTTAGAATGCATTAGGTTATGGCTAGTCATCTTGTATGTGTATGACTACTCATCTTCAGTAAATCATAAGGATCGCCAACTCATGTGTGATTCCAGCTGGGTCCTTACGAAGTTTTGTCTTATTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

133

Amino Acids

15.5

Weight (kDa)

8.37

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 9, 39
AlwI GGATC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 9, 39
BfaI CTAG 1 cut(s) 293
BglII AGATCT 1 cut(s) 95
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 14, 371
BmsI GCATC 2 cut(s) 100, 149
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 9, 39
BsmI GAATGC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 95, 340
Bsp19I CCATGG 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 14, 371
BspPI GGATC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 2 cut(s) 95, 340
BssT1I CCWWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 8
BstKTI GATC 2 cut(s) 98, 343
BstMAI GTCTC 2 cut(s) 9, 39
BstMBI GATC 2 cut(s) 95, 340
BstNSI RCATGY 2 cut(s) 106, 223
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 205
CviAII CATG 6 cut(s) 9, 103, 129, 220, 236, 352
CviJI RGCY 3 cut(s) 44, 292, 366
CviKI_1 RGCY 3 cut(s) 44, 292, 366
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 97, 342
DpnII GATC 2 cut(s) 95, 340
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 2 cut(s) 241, 281
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 6 cut(s) 12, 106, 132, 223, 239, 355
FatI CATG 6 cut(s) 8, 102, 128, 219, 235, 351
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 370
Hin1II CATG 6 cut(s) 12, 106, 132, 223, 239, 355
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 2 cut(s) 38, 59
HpyAV CCTTC 2 cut(s) 26, 176
HpyCH4V TGCA 4 cut(s) 47, 140, 239, 279
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 6 cut(s) 12, 106, 132, 223, 239, 355
Kzo9I GATC 2 cut(s) 95, 340
LguI GCTCTTC 1 cut(s) 120
LpnPI CCDG 2 cut(s) 352, 376
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 100, 149
MaeI CTAG 1 cut(s) 293
MalI GATC 2 cut(s) 97, 342
MboI GATC 2 cut(s) 95, 340
MboII GAAGA 2 cut(s) 107, 315
MflI RGATCY 1 cut(s) 95
MluCI AATT 1 cut(s) 252
MnlI CCTC 4 cut(s) 30, 34, 69, 185
Mph1103I ATGCAT 2 cut(s) 241, 281
MspA1I CMGCKG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 8
NdeII GATC 2 cut(s) 95, 340
NlaIII CATG 6 cut(s) 12, 106, 132, 223, 239, 355
NlaIV GGNNCC 2 cut(s) 14, 371
NsiI ATGCAT 2 cut(s) 241, 281
NspI RCATGY 2 cut(s) 106, 223
PciI ACATGT 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 14, 371
PspPI GGNCC 1 cut(s) 370
PspPPI RGGWCCY 1 cut(s) 370
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 366
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 95, 340
Sau96I GGNCC 1 cut(s) 370
SetI ASST 5 cut(s) 18, 168, 252, 287, 368
SfaNI GCATC 2 cut(s) 100, 149
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 1 cut(s) 252
SspMI CTAG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 8
TasI AATT 1 cut(s) 252
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 359
TseI GCWGC 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 370
XceI RCATGY 2 cut(s) 106, 223
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 2 cut(s) 241, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.