Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11295882 .. 11298583

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G139100.1_v2.0.a1.CDS.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTGAATGTGGAGGCTGGCTTCGGAGATCTCGGTGATGTTAGTTTAGTCCAGTCTAAGCTTCCAAAGAAACTTAAGAAGCGGAGGCCAATAGTAACCAAAGATGGCCCTGCTGGATATGAGGAATACATTGATTACAGCTTCCCAGAAGAAGCACATACCCAAAACCTCAAGATATTGGAAGCTGCCTACATGTGGAACAAGCGAAAGCTAAAACGGAAGAGTGATGCGGCAGATTACGAAGCTGAGTCTAGTGATAGGTCAGCTGCTCCTGGTCCTGGATATACTGAAGTAGTTACCAGCCCCCTGCAGACTCCCTTGTCAAGCAAGGTGGGAAAGGCAAACAAAACATCGAGGCTGACAAAGTGCAGCAGATCTGGACCGCAGACTCTGGCTTGTAATGTGGGTTCTCCTTCTGCGGCTAACCTTACTCCCGCTGGACCTTGTCGTTTTGACAGCGCCCTAGGTGACTACTTTCCTATCTGTTGTAATGTATTCTATGTCAAGGATCTGCAAATTGCACAAGTTGAAAACCTATCTGATGAGGAGCGCAGATTGGATCAGCAAATAAGAGAAATGCAGGAAAGGTTGAGGGACCTGAGCGAAGATGAGAGCAATAAGAAATGGCTTTTTGTCACTGAAGAAGACATCAAGGGCTTACCTTCAGGGAGTAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032989 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051302 GO:0051445 GO:0051446 GO:0051726 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko01522 ko03018 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map03018 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

E2F_CC-MB E2F_TDP

Protein Analysis

227

Amino Acids

25.19

Weight (kDa)

6.64

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AciI	CCGC	5 cut(s)	82, 230, 383, 419, 435
AclWI	GGATC	2 cut(s)	516, 567
AcuI	CTGAAG	3 cut(s)	309, 648, 660
AfiI	CCNNNNNNNGG	2 cut(s)	195, 278
AflII	CTTAAG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	7, 530
AjnI	CCWGG	2 cut(s)	271, 277
AluBI	AGCT	6 cut(s)	61, 141, 185, 211, 245, 266
AluI	AGCT	6 cut(s)	61, 141, 185, 211, 245, 266
AlwI	GGATC	2 cut(s)	516, 567
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	86, 106
ApeKI	GCWGC	3 cut(s)	185, 266, 369
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	461, 552
AspS9I	GGNCC	5 cut(s)	107, 275, 380, 440, 595
AsuHPI	GGTGA	2 cut(s)	47, 479
AvaII	GGWCC	4 cut(s)	275, 380, 440, 595
AvrII	CCTAGG	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	172, 253, 381
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	273, 279
BfaI	CTAG	2 cut(s)	252, 464
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	74
BglII	AGATCT	2 cut(s)	28, 374
BisI	GCNGC	5 cut(s)	186, 231, 267, 370, 420
BlnI	CCTAGG	1 cut(s)	463
BlsI	GCNGC	5 cut(s)	187, 232, 268, 371, 421
Bme1390I	CCNGG	2 cut(s)	273, 279
Bme18I	GGWCC	4 cut(s)	275, 380, 440, 595
BmgT120I	GGNCC	5 cut(s)	107, 275, 380, 440, 595
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	273, 279
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 278
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	273, 279
BseDI	CCNNGG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	195, 278
BseMII	CTCAG	2 cut(s)	237, 590
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	172, 253, 381
BsgI	GTGCAG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	88, 108
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	195, 278
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	88, 108
Bsp143I	GATC	4 cut(s)	28, 374, 508, 559
BspACI	CCGC	5 cut(s)	82, 230, 383, 419, 435
BspANI	GGCC	2 cut(s)	88, 108
BspCNI	CTCAG	2 cut(s)	238, 591
BspLI	GGNNCC	1 cut(s)	596
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	516, 567
BspTI	CTTAAG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	4 cut(s)	28, 374, 508, 559
BssT1I	CCWWGG	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	273, 279
Bst6I	CTCTTC	1 cut(s)	215
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	57, 246, 599
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	461, 552
BstKTI	GATC	4 cut(s)	31, 377, 511, 562
BstMBI	GATC	4 cut(s)	28, 374, 508, 559
BstNI	CCWGG	2 cut(s)	273, 279
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	271, 277
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	3 cut(s)	172, 253, 381
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	3 cut(s)	28, 374, 508
BstYI	RGATCY	3 cut(s)	28, 374, 508
BsuRI	GGCC	2 cut(s)	88, 108
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	2 cut(s)	461, 552
Cfr13I	GGNCC	5 cut(s)	107, 275, 380, 440, 595
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	1 cut(s)	193
DdeI	CTNAG	3 cut(s)	57, 246, 599
DpnI	GATC	4 cut(s)	30, 376, 510, 561
DpnII	GATC	4 cut(s)	28, 374, 508, 559
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	463
Eco47I	GGWCC	4 cut(s)	275, 380, 440, 595
Eco57I	CTGAAG	3 cut(s)	309, 648, 660
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	271, 277
EcoT14I	CCWWGG	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	1 cut(s)	196
FaiI	YATR	5 cut(s)	120, 159, 194, 285, 501
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	186, 231, 267, 370, 420
Fsp4HI	GCNGC	5 cut(s)	186, 231, 267, 370, 420
FspBI	CTAG	2 cut(s)	252, 464
GlaI	GCGC	2 cut(s)	460, 551
GluI	GCNGC	5 cut(s)	186, 231, 267, 370, 420
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	88, 108
HhaI	GCGC	2 cut(s)	461, 552
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	459, 550
HinP1I	GCGC	2 cut(s)	459, 550
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	3 cut(s)	248, 313, 388
HphI	GGTGA	2 cut(s)	47, 479
Hpy188I	TCNGA	2 cut(s)	26, 541
Hpy188III	TCNNGA	2 cut(s)	172, 378
HpyAV	CCTTC	2 cut(s)	423, 672
HpyCH4V	TGCA	5 cut(s)	310, 369, 514, 521, 580
HpyF3I	CTNAG	3 cut(s)	57, 246, 599
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	459, 550
Kzo9I	GATC	4 cut(s)	28, 374, 508, 559
LmnI	GCTCC	2 cut(s)	274, 547
Lsp1109I	GCAGC	3 cut(s)	172, 253, 381
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	252, 464
MaeIII	GTNAC	4 cut(s)	94, 295, 467, 634
MalI	GATC	4 cut(s)	30, 376, 510, 561
MboI	GATC	4 cut(s)	28, 374, 508, 559
MboII	GAAGA	5 cut(s)	161, 232, 617, 653, 656
MflI	RGATCY	3 cut(s)	28, 374, 508
MluCI	AATT	1 cut(s)	516
MlyI	GAGTC	3 cut(s)	257, 307, 382
MnlI	CCTC	7 cut(s)	7, 78, 115, 179, 348, 538, 585
MseI	TTAA	2 cut(s)	75, 679
MspA1I	CMGCKG	2 cut(s)	266, 437
MspCI	CTTAAG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	273, 279
MvaI	CCWGG	2 cut(s)	273, 279
NdeII	GATC	4 cut(s)	28, 374, 508, 559
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	596
NmuCI	GTSAC	2 cut(s)	467, 634
NspI	RCATGY	1 cut(s)	196
PciI	ACATGT	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	444
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	187, 232, 268, 371, 421
PleI	GAGTC	3 cut(s)	256, 307, 382
PpsI	GAGTC	3 cut(s)	256, 307, 382
PpuMI	RGGWCCY	1 cut(s)	595
PscI	ACATGT	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	271, 277
PspGI	CCWGG	2 cut(s)	271, 277
PspN4I	GGNNCC	1 cut(s)	596
PspPI	GGNCC	5 cut(s)	107, 275, 380, 440, 595
PspPPI	RGGWCCY	1 cut(s)	595
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	3 cut(s)	28, 374, 508
PsyI	GACNNNGTC	1 cut(s)	444
PvuII	CAGCTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	75, 679
SatI	GCNGC	5 cut(s)	186, 231, 267, 370, 420
Sau3AI	GATC	4 cut(s)	28, 374, 508, 559
Sau96I	GGNCC	5 cut(s)	107, 275, 380, 440, 595
SchI	GAGTC	3 cut(s)	257, 307, 382
ScrFI	CCNGG	2 cut(s)	273, 279
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	4 cut(s)	275, 380, 440, 595
SmlI	CTYRAG	2 cut(s)	74, 170
SmoI	CTYRAG	2 cut(s)	74, 170
Sse9I	AATT	1 cut(s)	516
SsiI	CCGC	5 cut(s)	82, 230, 383, 419, 435
SspMI	CTAG	2 cut(s)	252, 464
StyD4I	CCNGG	2 cut(s)	271, 277
StyI	CCWWGG	1 cut(s)	463
TaqI	TCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	516
TauI	GCSGC	2 cut(s)	233, 422
Tru1I	TTAA	2 cut(s)	75, 679
Tru9I	TTAA	2 cut(s)	75, 679
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	467, 634
TseI	GCWGC	3 cut(s)	185, 266, 369
Tsp45I	GTSAC	2 cut(s)	467, 634
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	643
Tth111I	GACNNNGTC	1 cut(s)	444
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	4 cut(s)	275, 380, 440, 595
XceI	RCATGY	1 cut(s)	196
XmaJI	CCTAGG	1 cut(s)	463
XspI	CTAG	2 cut(s)	252, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.