Prupe.6G140700_v2.0.a1

Crooked neck-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
11389071 .. 11390601
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G140700.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1095 bp
ATGGTTTATGATGTTGAGAGGCAGAATAGGGATTGGACGAAGCTTCGGTACGAGCTTGAGGTTGGGATCAATCCTCTAAATTGCGATTCCTGGAGTCGTTACATACGGCTAGAAGAAGATAGTGCTCTAGCTCTAGCCCATAACCACAGAATTAGAGAGCTCTATTCCAGAGCTTTAGCTCATGTTCCTCCGCTTTGCAAGCTGCTTTGGAAGCGCTATGTTGATTTGTGGATCGACTATGCATGGTATGAGGAATTTGTTGCTCCTGGAGGAGATCTCTTTTCGTTTGTGAAAGCATGGCTTCATGCCACCCAGTTTGAGATTCGACAGTTGAATCTCGAGGGGGCGCGCAAGATCCTTGGTGCGTCAAGAGACTGTGCACTTAAAGCTGCAATATTTGACAAGTACATAGAGATGGAGCTGACACTTGGGAATGTAGATCGATGTCGGAAACTGTATGAGAATTATCTGGATTGGTCACCACGTAATAGCAATACATGGGTCAAATACGCAGAGCTAGAGAAGACTCTAGGTGAGGAAGAACGAGCAAGGGGGATTTTCGAAATTGCCCTTGGGCAGTCGCAACTTAACAAGCCTGGATTGTTGTGGAAGGATTCTCTTGTTGCACAAGAAAGAGAGGAACAATGTGCATGCATTCAGCGTTGTAGAGGAGTTTTCGAGAGAGCTGTCCAGTACTTGGATATGAATAAATTGAAGGTAGAAAGGTTGATGTTGCTAAAAGAATGGTTGATAATGGAGGCTAGCTTTGGGGATATGGGTGATGTTAGCCTAGTCAAAGCTAAGTTTCCAATTAATTCAATGCGAAGAGGAAGAGGCCTTGCATCCACTCTCCCATCCCCTCTCCATCTCCGTTGTTCTCATCAATACTTGTCCAGAAAATTTGAAACCAGGGTCCCCTACGCCAAATCACCCAATCTCTCCGTCTCTCCCTTTCCCGACATCTCACCCCAGATTTGTAACCAGCCCTACTTCGCCAGCCAATCCACCCACTCTTCCTACCTCTCAATCCCAAGCTTTACGCAAATTGTATATCTCCGTCCAGAATTTATTGCTGGAAAGGGTCCGGCCGACTAG

Protein Analysis

365

Amino Acids

42.28

Weight (kDa)

8.46

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 697
AccII CGCG 1 cut(s) 349
AciI CCGC 1 cut(s) 191
AclWI GGATC 3 cut(s) 74, 239, 349
AcoI YGGCCR 1 cut(s) 1086
AcsI RAATTY 3 cut(s) 254, 899, 1064
AfaI GTAC 3 cut(s) 50, 407, 695
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 697
AgsI TTSAA 4 cut(s) 334, 715, 819, 905
AjnI CCWGG 4 cut(s) 89, 265, 595, 908
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
Alw21I GWGCWC 3 cut(s) 127, 162, 382
Alw26I GTCTC 2 cut(s) 366, 949
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 3 cut(s) 74, 239, 349
Ama87I CYCGRG 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 2 cut(s) 835, 1086
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 202, 389
ApoI RAATTY 3 cut(s) 254, 899, 1064
AseI ATTAAT 1 cut(s) 813
AspLEI GCGC 3 cut(s) 216, 349, 351
AspS9I GGNCC 2 cut(s) 913, 1082
AsuHPI GGTGA 5 cut(s) 471, 545, 791, 921, 957
AsuII TTCGAA 1 cut(s) 561
AsuNHI GCTAGC 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 2 cut(s) 913, 1082
BaeGI GKGCMC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 32, 64
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 3 cut(s) 127, 162, 382
BbvI GCAGC 2 cut(s) 189, 376
BccI CCATC 3 cut(s) 409, 862, 873
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 4 cut(s) 91, 267, 597, 910
BcoDI GTCTC 2 cut(s) 366, 949
BfaI CTAG 8 cut(s) 110, 128, 134, 518, 530, 762, 791, 1093
BfoI RGCGCY 1 cut(s) 217
BglII AGATCT 1 cut(s) 274
BisI GCNGC 2 cut(s) 203, 390
BlsI GCNGC 2 cut(s) 204, 391
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 4 cut(s) 91, 267, 597, 910
Bme18I GGWCC 2 cut(s) 913, 1082
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 913, 1082
BmiI GGNNCC 3 cut(s) 914, 915, 1083
BmrFI CCNGG 4 cut(s) 91, 267, 597, 910
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 851
BmtI GCTAGC 1 cut(s) 765
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 261, 293
BpmI CTGGAG 2 cut(s) 112, 288
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 485
BsaJI CCNNGG 3 cut(s) 358, 571, 909
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 313, 691
BseBI CCWGG 4 cut(s) 91, 267, 597, 910
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 358, 571, 909
BseGI GGATG 2 cut(s) 842, 854
BseLI CCNNNNNNNGG 1 cut(s) 697
BseNI ACTGG 2 cut(s) 313, 691
BsePI GCGCGC 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 285, 684
BseSI GKGCMC 1 cut(s) 382
BseX3I CGGCCG 1 cut(s) 1086
BseXI GCAGC 2 cut(s) 189, 376
Bsh1236I CGCG 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 1089
BshFI GGCC 2 cut(s) 837, 1088
BshVI ATCGAT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 1089
BsiHKAI GWGCWC 3 cut(s) 127, 162, 382
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 1085
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 2 cut(s) 366, 949
BsmBI CGTCTC 1 cut(s) 949
BsmFI GGGAC 1 cut(s) 899
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 2 cut(s) 837, 1088
BsoBI CYCGRG 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 127, 162, 382
Bsp143I GATC 5 cut(s) 66, 231, 274, 354, 439
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 837, 1088
BspDI ATCGAT 1 cut(s) 442
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 3 cut(s) 914, 915, 1083
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 3 cut(s) 74, 239, 349
BspT104I TTCGAA 1 cut(s) 561
BsrI ACTGG 2 cut(s) 313, 691
BssECI CCNNGG 3 cut(s) 358, 571, 909
BssHII GCGCGC 1 cut(s) 347
BssMI GATC 5 cut(s) 66, 231, 274, 354, 439
BssT1I CCWWGG 2 cut(s) 358, 571
Bst2UI CCWGG 4 cut(s) 91, 267, 597, 910
Bst4CI ACNGT 3 cut(s) 330, 377, 456
Bst6I CTCTTC 3 cut(s) 820, 826, 1018
BstBAI YACGTR 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 5 cut(s) 200, 349, 652, 763, 997
BstDEI CTNAG 1 cut(s) 801
BstEII GGTNACC 1 cut(s) 477
BstF5I GGATG 2 cut(s) 842, 854
BstFNI CGCG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 3 cut(s) 216, 349, 351
BstKTI GATC 5 cut(s) 69, 234, 277, 357, 442
BstMAI GTCTC 2 cut(s) 366, 949
BstMBI GATC 5 cut(s) 66, 231, 274, 354, 439
BstMCI CGRYCG 1 cut(s) 1089
BstMWI GCNNNNNNNGC 3 cut(s) 199, 211, 386
BstNI CCWGG 4 cut(s) 91, 267, 597, 910
BstNSI RCATGY 1 cut(s) 654
BstPI GGTNACC 1 cut(s) 477
BstSCI CCNGG 4 cut(s) 89, 265, 595, 908
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 189, 376
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 2 cut(s) 274, 354
BstYI RGATCY 2 cut(s) 274, 354
BstZI CGGCCG 1 cut(s) 1086
Bsu15I ATCGAT 1 cut(s) 442
BsuRI GGCC 2 cut(s) 837, 1088
BsuTUI ATCGAT 1 cut(s) 442
BtsCI GGATG 2 cut(s) 842, 854
Cac8I GCNNGC 5 cut(s) 200, 349, 652, 763, 997
CfoI GCGC 3 cut(s) 216, 349, 351
Cfr13I GGNCC 2 cut(s) 913, 1082
ClaI ATCGAT 1 cut(s) 442
CseI GACGC 1 cut(s) 354
Csp6I GTAC 3 cut(s) 49, 406, 694
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 6 cut(s) 182, 243, 297, 305, 498, 651
CviQI GTAC 3 cut(s) 49, 406, 694
DdeI CTNAG 1 cut(s) 801
DpnI GATC 5 cut(s) 68, 233, 276, 356, 441
DpnII GATC 5 cut(s) 66, 231, 274, 354, 439
EaeI YGGCCR 1 cut(s) 1086
EagI CGGCCG 1 cut(s) 1086
Eam1104I CTCTTC 3 cut(s) 820, 826, 1018
EarI CTCTTC 3 cut(s) 820, 826, 1018
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 1086
Eco130I CCWWGG 2 cut(s) 358, 571
Eco147I AGGCCT 1 cut(s) 837
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 913, 1082
Eco47III AGCGCT 1 cut(s) 215
Eco52I CGGCCG 1 cut(s) 1086
Eco53kI GAGCTC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 477
EcoRII CCWGG 4 cut(s) 89, 265, 595, 908
EcoT14I CCWWGG 2 cut(s) 358, 571
EcoT22I ATGCAT 2 cut(s) 244, 656
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 358, 571
Esp3I CGTCTC 1 cut(s) 949
FaeI CATG 6 cut(s) 185, 246, 300, 308, 501, 654
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 899
FatI CATG 6 cut(s) 181, 242, 296, 304, 497, 650
Fnu4HI GCNGC 2 cut(s) 203, 390
FokI GGATG 2 cut(s) 829, 841
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 203, 390
FspBI CTAG 8 cut(s) 110, 128, 134, 518, 530, 762, 791, 1093
GlaI GCGC 3 cut(s) 215, 348, 350
GluI GCNGC 2 cut(s) 203, 390
GsuI CTGGAG 2 cut(s) 112, 288
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 2 cut(s) 837, 1088
HapII CCGG 1 cut(s) 1085
HgaI GACGC 1 cut(s) 354
HhaI GCGC 3 cut(s) 216, 349, 351
Hin1II CATG 6 cut(s) 185, 246, 300, 308, 501, 654
Hin6I GCGC 3 cut(s) 214, 347, 349
HinP1I GCGC 3 cut(s) 214, 347, 349
HindIII AAGCTT 2 cut(s) 41, 1033
HinfI GANTC 6 cut(s) 86, 94, 322, 334, 526, 614
HpaII CCGG 1 cut(s) 1085
HphI GGTGA 5 cut(s) 471, 545, 791, 921, 957
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 8 cut(s) 168, 338, 369, 470, 679, 894, 956, 1061
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 604, 709
HpyCH4III ACNGT 3 cut(s) 330, 377, 456
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 8 cut(s) 198, 242, 380, 392, 626, 650, 654, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 211, 386
HpyF3I CTNAG 1 cut(s) 801
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 6 cut(s) 185, 246, 300, 308, 501, 654
HspAI GCGC 3 cut(s) 214, 347, 349
KflI GGGWCCC 1 cut(s) 913
Kzo9I GATC 5 cut(s) 66, 231, 274, 354, 439
LmnI GCTCC 2 cut(s) 268, 418
Lsp1109I GCAGC 2 cut(s) 189, 376
LweI GCATC 1 cut(s) 851
MaeI CTAG 8 cut(s) 110, 128, 134, 518, 530, 762, 791, 1093
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 3 cut(s) 98, 477, 977
MalI GATC 5 cut(s) 68, 233, 276, 356, 441
MboI GATC 5 cut(s) 66, 231, 274, 354, 439
MboII GAAGA 7 cut(s) 125, 128, 535, 551, 837, 843, 1005
MflI RGATCY 2 cut(s) 274, 354
MhlI GDGCHC 3 cut(s) 127, 162, 382
MlyI GAGTC 2 cut(s) 103, 520
MmeI TCCRAC 1 cut(s) 428
Mph1103I ATGCAT 2 cut(s) 244, 656
MseI TTAA 3 cut(s) 384, 588, 813
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 1 cut(s) 1085
MspR9I CCNGG 4 cut(s) 91, 267, 597, 910
Mva1269I GAATGC 1 cut(s) 654
MvaI CCWGG 4 cut(s) 91, 267, 597, 910
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 3 cut(s) 199, 211, 386
NdeII GATC 5 cut(s) 66, 231, 274, 354, 439
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 6 cut(s) 185, 246, 300, 308, 501, 654
NlaIV GGNNCC 3 cut(s) 914, 915, 1083
NmuCI GTSAC 1 cut(s) 477
NsiI ATGCAT 2 cut(s) 244, 656
NspI RCATGY 1 cut(s) 654
NspV TTCGAA 1 cut(s) 561
PaeI GCATGC 1 cut(s) 654
PaeR7I CTCGAG 1 cut(s) 338
PauI GCGCGC 1 cut(s) 347
PceI AGGCCT 1 cut(s) 837
PctI GAATGC 1 cut(s) 654
PfeI GAWTC 4 cut(s) 86, 322, 334, 614
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 2 cut(s) 89, 265
PkrI GCNGC 2 cut(s) 204, 391
PleI GAGTC 2 cut(s) 102, 520
PpsI GAGTC 2 cut(s) 102, 520
Ppu21I YACGTR 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 913
PshBI ATTAAT 1 cut(s) 813
Psp124BI GAGCTC 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 913
Psp6I CCWGG 4 cut(s) 89, 265, 595, 908
PspEI GGTNACC 1 cut(s) 477
PspGI CCWGG 4 cut(s) 89, 265, 595, 908
PspN4I GGNNCC 3 cut(s) 914, 915, 1083
PspPI GGNCC 2 cut(s) 913, 1082
PspPPI RGGWCCY 1 cut(s) 913
PsuI RGATCY 2 cut(s) 274, 354
PteI GCGCGC 1 cut(s) 347
RsaI GTAC 3 cut(s) 50, 407, 695
RsaNI GTAC 3 cut(s) 49, 406, 694
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 384, 588, 813
SatI GCNGC 2 cut(s) 203, 390
Sau3AI GATC 5 cut(s) 66, 231, 274, 354, 439
Sau96I GGNCC 2 cut(s) 913, 1082
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 2 cut(s) 103, 520
ScrFI CCNGG 4 cut(s) 91, 267, 597, 910
SduI GDGCHC 3 cut(s) 127, 162, 382
SfaNI GCATC 1 cut(s) 851
Sfr274I CTCGAG 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 561
SinI GGWCC 2 cut(s) 913, 1082
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 56, 338
SmoI CTYRAG 2 cut(s) 56, 338
SphI GCATGC 1 cut(s) 654
SseBI AGGCCT 1 cut(s) 837
SsiI CCGC 1 cut(s) 191
SspI AATATT 1 cut(s) 396
SspMI CTAG 8 cut(s) 110, 128, 134, 518, 530, 762, 791, 1093
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 837
StyD4I CCNGG 4 cut(s) 89, 265, 595, 908
StyI CCWWGG 2 cut(s) 358, 571
TaaI ACNGT 3 cut(s) 330, 377, 456
TaiI ACGT 1 cut(s) 487
TaqI TCGA 6 cut(s) 234, 325, 339, 442, 561, 678
TatI WGTACW 2 cut(s) 405, 693
TfiI GAWTC 4 cut(s) 86, 322, 334, 614
Tru1I TTAA 3 cut(s) 384, 588, 813
Tru9I TTAA 3 cut(s) 384, 588, 813
TseFI GTSAC 1 cut(s) 477
TseI GCWGC 2 cut(s) 202, 389
Tsp45I GTSAC 1 cut(s) 477
TspDTI ATGAA 2 cut(s) 293, 719
TspGWI ACGGA 3 cut(s) 860, 931, 1046
Van91I CCANNNNNTGG 1 cut(s) 697
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 913, 1082
VspI ATTAAT 1 cut(s) 813
XapI RAATTY 3 cut(s) 254, 899, 1064
XceI RCATGY 1 cut(s) 654
XhoI CTCGAG 1 cut(s) 338
XspI CTAG 8 cut(s) 110, 128, 134, 518, 530, 762, 791, 1093
ZrmI AGTACT 1 cut(s) 695
Zsp2I ATGCAT 2 cut(s) 244, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.