Prupe.6G140900_v2.0.a1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
11419213 .. 11422463
3251 bp
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UTR
Exon/CDS
Intron
Prupe.6G140900.5_v2.0.a1.CDS.3

Sequence Viewer

Length: 267 bp
ATGCTTAACAATGATGGCTTACAGATGTTGCGTGTATCCCACCGCCCGAAAGATAAAAGTGGAGTCCTTAAGAAGAAGTTTGCTGGAATTCAAGCTGACAGGAAGGAGAGGGAAGAAGCTGAAGCAGTGAAGGTGGCTGCACAACTCAAGAAAACGGAAGTTTCAGCCTATCTATTCTCAAGCAGCTTGAGTCCTAAAATTCTTGAAGGCTTGCTAGGAGAAGGTTTGTCAACACACGAGCAGATGAATGAAGTCAGGCACGAGTGA

Protein Analysis

89

Amino Acids

9.83

Weight (kDa)

9.0

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AcsI RAATTY 2 cut(s) 87, 198
AcuI CTGAAG 1 cut(s) 141
AflII CTTAAG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 92, 206
AluBI AGCT 3 cut(s) 95, 119, 186
AluI AGCT 3 cut(s) 95, 119, 186
ApeKI GCWGC 2 cut(s) 137, 183
ApoI RAATTY 2 cut(s) 87, 198
BauI CACGAG 2 cut(s) 236, 260
BbvI GCAGC 2 cut(s) 124, 195
BccI CCATC 1 cut(s) 8
BciVI GTATCC 1 cut(s) 46
BfaI CTAG 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 2 cut(s) 138, 184
BlsI GCNGC 2 cut(s) 139, 185
BpuEI CTTGAG 3 cut(s) 131, 163, 208
BseXI GCAGC 2 cut(s) 124, 195
BsgI GTGCAG 1 cut(s) 123
BspACI CCGC 1 cut(s) 43
BspTI CTTAAG 1 cut(s) 68
BssSI CACGAG 2 cut(s) 236, 260
Bst2BI CACGAG 2 cut(s) 236, 260
BstAFI CTTAAG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 124, 195
BsuI GTATCC 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 212
CviJI RGCY 7 cut(s) 18, 95, 119, 137, 167, 186, 210
CviKI_1 RGCY 7 cut(s) 18, 95, 119, 137, 167, 186, 210
Eco57I CTGAAG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 138, 184
Fsp4HI GCNGC 2 cut(s) 138, 184
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 138, 184
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HinfI GANTC 2 cut(s) 63, 190
Hpy166II GTNNAC 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 148, 203
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 4 cut(s) 97, 124, 200, 215
HpyCH4V TGCA 1 cut(s) 140
LpnPI CCDG 3 cut(s) 69, 85, 241
Lsp1109I GCAGC 2 cut(s) 124, 195
MaeI CTAG 1 cut(s) 215
MboII GAAGA 2 cut(s) 85, 125
MluCI AATT 2 cut(s) 87, 198
MlyI GAGTC 2 cut(s) 72, 199
MnlI CCTC 1 cut(s) 102
MseI TTAA 2 cut(s) 6, 69
MspCI CTTAAG 1 cut(s) 68
PkrI GCNGC 2 cut(s) 139, 185
PleI GAGTC 2 cut(s) 71, 198
PpsI GAGTC 2 cut(s) 71, 198
SaqAI TTAA 2 cut(s) 6, 69
SatI GCNGC 2 cut(s) 138, 184
SchI GAGTC 2 cut(s) 72, 199
SetI ASST 5 cut(s) 97, 121, 135, 188, 226
SmlI CTYRAG 4 cut(s) 68, 146, 178, 187
SmoI CTYRAG 4 cut(s) 68, 146, 178, 187
Sse9I AATT 2 cut(s) 87, 198
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 215
TasI AATT 2 cut(s) 87, 198
Tru1I TTAA 2 cut(s) 6, 69
Tru9I TTAA 2 cut(s) 6, 69
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 137, 183
TspDTI ATGAA 2 cut(s) 260, 264
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 132
Vha464I CTTAAG 1 cut(s) 68
XapI RAATTY 2 cut(s) 87, 198
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.