Prupe.6G142600_v2.0.a1

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
11544984 .. 11545811
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G142600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 828 bp
ATGAGTATAGCAGTGCAGCAGAATGATGAAAAACCGCCACACGACATTGATAGAGAAAAGTTACACCCAAAGGTAAAGGAAGCAGTCAAGATTGAAGCAAAATCCGCAGACCAAAAGGTGGTTGTAGTTGTAGTTGACGAGAACACACCTCTGCTTCCACCATCACCTAAGAAAAATCTGAAAAGGGCTGATGATGATGAGGAGGAGGAGGAGGAGGAGGATAGGAACAAGTTCGTGACGTGTATTATCTACCTGTTTTTACTTGTGATATTGTTCTTTTGTGCCACATTGTATCAAACACCAAAAGGGTTTTCCTCCTCAAGCATCCAGGTGCACTCGTTTTCGGTTGAGCTCTTCAAAGTCTCTGTTCTCAACTCTCAAGTAACTGCTCTCTGGAACATCAGTTTCTTCTTAACAAACCCTTATAGCATTGTTAGGGTAACTTATCAGGTACTCGACGCCGAGGTCTTTTACAGAGATGAGTTTCTCGGAGGAGCATTGATCAGGCCTTTTGTTCAGCAGCCGGAGGAGACAGAGTTCATGTCGGTCGCTGTTATTGTCTCCCCCGCAGTTGTTAGCAACCAGATAGCCGGAGCCATTGATGCAGAAAGAAGCCAAACTTGGGCTGTGGATTTCAACGTCAAAATTCATGCAAAGATCCGCGTAGAATGGGGCGGTTGGCGATGGATTTTTGCTAGTGCACCAGGAACGTTTGAGATATGGTTTAACTGTGAAAAGTTGAGGGTTCAATTCTCTTCAAATGCGACAGCTGGATCAATATTGCCAGGAGAGACAGCCGAATGCGGCTATGATTCAGAGTATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

276

Amino Acids

31.15

Weight (kDa)

4.9

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 118
AccII CGCG 1 cut(s) 663
AciI CCGC 6 cut(s) 35, 105, 567, 661, 675, 804
AclI AACGTT 1 cut(s) 710
AclWI GGATC 2 cut(s) 652, 781
AcsI RAATTY 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 2 cut(s) 118, 622
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 5 cut(s) 95, 358, 637, 749, 759
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 3 cut(s) 327, 703, 784
AjuI GAANNNNNNNTTGG 4 cut(s) 295, 327, 604, 636
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 2 cut(s) 352, 770
AluI AGCT 2 cut(s) 352, 770
Alw21I GWGCWC 3 cut(s) 336, 354, 703
Alw26I GTCTC 4 cut(s) 367, 524, 565, 785
Alw44I GTGCAC 2 cut(s) 332, 699
AlwI GGATC 2 cut(s) 652, 781
AoxI GGCC 1 cut(s) 506
ApaLI GTGCAC 2 cut(s) 332, 699
ApeKI GCWGC 2 cut(s) 16, 520
ApoI RAATTY 1 cut(s) 645
Asp700I GAANNNNTTC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 156
BaeGI GKGCMC 2 cut(s) 336, 703
BanII GRGCYC 1 cut(s) 354
Bbv12I GWGCWC 3 cut(s) 336, 354, 703
BbvI GCAGC 2 cut(s) 28, 532
BccI CCATC 2 cut(s) 169, 678
BciT130I CCWGG 3 cut(s) 329, 705, 786
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 4 cut(s) 367, 524, 565, 785
BfaI CTAG 1 cut(s) 696
BisI GCNGC 3 cut(s) 17, 521, 805
BlsI GCNGC 3 cut(s) 18, 522, 806
Bme1390I CCNGG 3 cut(s) 329, 705, 786
BmgBI CACGTC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 3 cut(s) 329, 705, 786
BmsI GCATC 2 cut(s) 333, 592
BpuEI CTTGAG 2 cut(s) 304, 363
Bsa29I ATCGAT 1 cut(s) 823
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 622
BseBI CCWGG 3 cut(s) 329, 705, 786
BseCI ATCGAT 1 cut(s) 823
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 118, 622
BseRI GAGGAG 9 cut(s) 215, 218, 221, 224, 227, 230, 307, 507, 542
BseSI GKGCMC 2 cut(s) 336, 703
BseXI GCAGC 2 cut(s) 28, 532
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 549
BshFI GGCC 1 cut(s) 508
BshVI ATCGAT 1 cut(s) 823
BsiEI CGRYCG 1 cut(s) 549
BsiHKAI GWGCWC 3 cut(s) 336, 354, 703
BsiSI CCGG 2 cut(s) 524, 591
BslI CCNNNNNNNGG 2 cut(s) 118, 622
BsmAI GTCTC 4 cut(s) 367, 524, 565, 785
BsmI GAATGC 1 cut(s) 806
BsnI GGCC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 336, 354, 703
Bsp143I GATC 3 cut(s) 501, 657, 773
BspACI CCGC 6 cut(s) 35, 105, 567, 661, 675, 804
BspANI GGCC 1 cut(s) 508
BspDI ATCGAT 1 cut(s) 823
BspFNI CGCG 1 cut(s) 663
BspLI GGNNCC 1 cut(s) 595
BspPI GGATC 2 cut(s) 652, 781
BspQI GCTCTTC 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 3 cut(s) 501, 657, 773
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 329, 705, 786
Bst4CI ACNGT 1 cut(s) 731
Bst6I CTCTTC 2 cut(s) 359, 760
BstACI GRCGYC 1 cut(s) 459
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 3 cut(s) 504, 660, 776
BstMAI GTCTC 4 cut(s) 367, 524, 565, 785
BstMBI GATC 3 cut(s) 501, 657, 773
BstMCI CGRYCG 1 cut(s) 549
BstMWI GCNNNNNNNGC 2 cut(s) 104, 602
BstNI CCWGG 3 cut(s) 329, 705, 786
BstSCI CCNGG 3 cut(s) 327, 703, 784
BstSLI GKGCMC 2 cut(s) 336, 703
BstUI CGCG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 28, 532
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
Bsu15I ATCGAT 1 cut(s) 823
BsuRI GGCC 1 cut(s) 508
BsuTUI ATCGAT 1 cut(s) 823
BtgZI GCGATG 1 cut(s) 697
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 823
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 452
CviAII CATG 2 cut(s) 541, 650
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 503, 659, 775
DpnII GATC 3 cut(s) 501, 657, 773
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
Eam1104I CTCTTC 2 cut(s) 359, 760
EarI CTCTTC 2 cut(s) 359, 760
Ecl136II GAGCTC 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 327, 703, 784
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 2 cut(s) 544, 653
FaiI YATR 6 cut(s) 8, 426, 542, 651, 721, 810
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FatI CATG 2 cut(s) 540, 649
FauI CCCGC 1 cut(s) 574
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 17, 521, 805
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 17, 521, 805
FspBI CTAG 1 cut(s) 696
GluI GCNGC 3 cut(s) 17, 521, 805
HaeIII GGCC 1 cut(s) 508
HapII CCGG 2 cut(s) 524, 591
HgaI GACGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 2 cut(s) 544, 653
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 812
HpaII CCGG 2 cut(s) 524, 591
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 3 cut(s) 136, 334, 701
Hpy188I TCNGA 3 cut(s) 180, 491, 817
Hpy188III TCNNGA 3 cut(s) 88, 235, 394
Hpy8I GTNNAC 3 cut(s) 136, 334, 701
Hpy99I CGWCG 1 cut(s) 461
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4IV ACGT 3 cut(s) 239, 639, 710
HpyCH4V TGCA 5 cut(s) 16, 334, 605, 653, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 602
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 3 cut(s) 239, 639, 710
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 544, 653
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 3 cut(s) 501, 657, 773
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 2 cut(s) 494, 593
Lsp1109I GCAGC 2 cut(s) 28, 532
LweI GCATC 2 cut(s) 333, 592
MaeI CTAG 1 cut(s) 696
MaeII ACGT 3 cut(s) 239, 639, 710
MaeIII GTNAC 4 cut(s) 60, 235, 382, 439
MalI GATC 3 cut(s) 503, 659, 775
MboI GATC 3 cut(s) 501, 657, 773
MboII GAAGA 3 cut(s) 346, 400, 747
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 3 cut(s) 336, 354, 703
MluCI AATT 2 cut(s) 645, 749
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 2 cut(s) 413, 726
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 2 cut(s) 524, 591
MspR9I CCNGG 3 cut(s) 329, 705, 786
Mva1269I GAATGC 1 cut(s) 806
MvaI CCWGG 3 cut(s) 329, 705, 786
MvnI CGCG 1 cut(s) 663
MwoI GCNNNNNNNGC 2 cut(s) 104, 602
NdeII GATC 3 cut(s) 501, 657, 773
NlaIII CATG 2 cut(s) 544, 653
NlaIV GGNNCC 1 cut(s) 595
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 235
PceI AGGCCT 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 1 cut(s) 806
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 812
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 3 cut(s) 18, 522, 806
Psp124BI GAGCTC 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 710
Psp6I CCWGG 3 cut(s) 327, 703, 784
PspGI CCWGG 3 cut(s) 327, 703, 784
PspN4I GGNNCC 1 cut(s) 595
PsuI RGATCY 1 cut(s) 657
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 413, 726
SatI GCNGC 3 cut(s) 17, 521, 805
Sau3AI GATC 3 cut(s) 501, 657, 773
ScrFI CCNGG 3 cut(s) 329, 705, 786
SduI GDGCHC 3 cut(s) 336, 354, 703
SfaNI GCATC 2 cut(s) 333, 592
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 319, 378
SmoI CTYRAG 2 cut(s) 319, 378
Sse9I AATT 2 cut(s) 645, 749
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 6 cut(s) 35, 105, 567, 661, 675, 804
SspI AATATT 1 cut(s) 780
SspMI CTAG 1 cut(s) 696
SstI GAGCTC 1 cut(s) 354
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 3 cut(s) 327, 703, 784
TaaI ACNGT 1 cut(s) 731
TaiI ACGT 3 cut(s) 242, 642, 713
TaqI TCGA 2 cut(s) 456, 823
TaqII GACCGA 1 cut(s) 535
TasI AATT 2 cut(s) 645, 749
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 2 cut(s) 413, 726
Tru9I TTAA 2 cut(s) 413, 726
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 16, 520
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 42, 529, 638
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 118
VneI GTGCAC 2 cut(s) 332, 699
XapI RAATTY 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.