Prupe.6G144400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
11743263 .. 11743373
111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G144400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 111 bp
ATGGCCGGCCGGAGATTGCGATTGAACTCGTGGAACTTGGATCCGGAGAGGAAGAGGACTGGTGGATTGAGGACGAAGCAGGCGGGAAGAGGATCATGCCGTGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

37

Amino Acids

4.04

Weight (kDa)

12.0

Isoelectric Point (pI)

69.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 1 cut(s) 83
AclWI GGATC 3 cut(s) 35, 48, 100
AcoI YGGCCR 2 cut(s) 3, 7
AgsI TTSAA 1 cut(s) 25
AlwI GGATC 3 cut(s) 35, 48, 100
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 2 cut(s) 3, 7
BamHI GGATCC 1 cut(s) 40
BauI CACGAG 1 cut(s) 28
BceAI ACGGC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 64
BseX3I CGGCCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 5, 9
BsiEI CGRYCG 1 cut(s) 10
BsiSI CCGG 3 cut(s) 6, 10, 44
BsnI GGCC 2 cut(s) 5, 9
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 2 cut(s) 40, 92
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 5, 9
BspEI TCCGGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 3 cut(s) 35, 48, 100
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 40, 92
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 47, 82
BstC8I GCNNGC 2 cut(s) 7, 81
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 2 cut(s) 43, 95
BstMBI GATC 2 cut(s) 40, 92
BstMCI CGRYCG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 5, 9
BtgI CCRYGG 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 7, 81
Cfr10I RCCGGY 1 cut(s) 5
CviAII CATG 1 cut(s) 96
CviJI RGCY 2 cut(s) 5, 9
CviKI_1 RGCY 2 cut(s) 5, 9
DpnI GATC 2 cut(s) 42, 94
DpnII GATC 2 cut(s) 40, 92
EaeI YGGCCR 2 cut(s) 3, 7
EagI CGGCCG 1 cut(s) 7
Eam1104I CTCTTC 2 cut(s) 47, 82
EarI CTCTTC 2 cut(s) 47, 82
EclXI CGGCCG 1 cut(s) 7
Eco52I CGGCCG 1 cut(s) 7
FaeI CATG 1 cut(s) 99
FaiI YATR 1 cut(s) 97
FatI CATG 1 cut(s) 95
FauI CCCGC 1 cut(s) 76
FseI GGCCGGCC 1 cut(s) 9
HaeIII GGCC 2 cut(s) 5, 9
HapII CCGG 3 cut(s) 6, 10, 44
Hin1II CATG 1 cut(s) 99
HpaII CCGG 3 cut(s) 6, 10, 44
Hpy188III TCNNGA 1 cut(s) 44
Hsp92II CATG 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 43
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 40, 92
LpnPI CCDG 5 cut(s) 19, 23, 45, 57, 65
MalI GATC 2 cut(s) 42, 94
MboI GATC 2 cut(s) 40, 92
MboII GAAGA 2 cut(s) 64, 99
MflI RGATCY 1 cut(s) 40
MnlI CCTC 4 cut(s) 42, 48, 63, 83
MroI TCCGGA 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 5
MspI CCGG 3 cut(s) 6, 10, 44
NaeI GCCGGC 1 cut(s) 7
NdeII GATC 2 cut(s) 40, 92
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 40
RigI GGCCGGCC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 40, 92
SgeI CNNG 9 cut(s) 18, 22, 40, 42, 49, 56, 72, 92, 96
SsiI CCGC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.