Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15453794 .. 15458105

Gene Structure 4312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G162800.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAACAACAAAGATCTCTCTCCCACGCTGTCTCTACGCAGCAACGACGACCACAGCCTTCACCTGCGATGGAATTCTCAAGCTGCTCATACCTTCGGCTTTCACCGGCAACTCCAAGGTCTTCTGGCTCAAGATGAAGAGCATTACGATCGCTATCTTGCGGAGTTCAAGATCGGCGCTGAGCACAATGACCAGTCAACCCTATTTGATCTCATTTTGGATGTATATGAACAGCATAAAAAGTTTATTTTACTTGGAGAGAGGGTTGTTCTTGTAACTCTTGCTTTTGATCTTAATGTAAACCATCCATATAAACCGCTAGTAGAGGCAATAAAGAAATTCAAACTAGCACATAGTGCCCTTGCTCAAGTTGCATGGAATTTTGTTAATGACGGGATCAAATCAGGTGGTAACAATTTGACTTTAAAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

6.49

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	2 cut(s)	161, 317
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	3 cut(s)	73, 338, 379
AdeI	CACNNNGTG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	169, 343
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	404
ApeKI	GCWGC	2 cut(s)	39, 83
ApoI	RAATTY	3 cut(s)	73, 338, 379
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	53, 95
BaeGI	GKGCMC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	51, 70
BccI	CCATC	2 cut(s)	63, 312
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	320, 347
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	2 cut(s)	40, 84
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	41, 85
BpiI	GAAGAC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	3 cut(s)	63, 114, 351
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	226, 304
BseJI	GATNNNNATC	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	51, 70
Bsh1285I	CGRYCG	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	186, 361
Bsp143I	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	2 cut(s)	161, 317
BspCNI	CTCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
BssT1I	CCWWGG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	226, 304
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	6 cut(s)	16, 151, 174, 211, 292, 399
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 371
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	51, 70
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	226, 304
BveI	ACCTGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	105
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	1 cut(s)	375
CviJI	RGCY	4 cut(s)	57, 83, 99, 128
CviKI_1	RGCY	4 cut(s)	57, 83, 99, 128
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	6 cut(s)	15, 150, 173, 210, 291, 398
DpnII	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
DraI	TTTAAA	1 cut(s)	426
DraIII	CACNNNGTG	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	378
FaiI	YATR	8 cut(s)	90, 226, 228, 237, 310, 312, 354, 376
FatI	CATG	1 cut(s)	374
Fnu4HI	GCNGC	2 cut(s)	40, 84
FokI	GGATG	2 cut(s)	233, 291
Fsp4HI	GCNGC	2 cut(s)	40, 84
FspBI	CTAG	2 cut(s)	320, 347
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	40, 84
HaeII	RGCGCY	1 cut(s)	180
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	53, 95
Hpy166II	GTNNAC	2 cut(s)	198, 301
Hpy188III	TCNNGA	2 cut(s)	131, 169
Hpy8I	GTNNAC	2 cut(s)	198, 301
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	68, 103
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 371
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	378
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	77, 110, 119, 206, 390
Lsp1109I	GCAGC	2 cut(s)	51, 70
MaeI	CTAG	2 cut(s)	320, 347
MaeIII	GTNAC	2 cut(s)	274, 410
MalI	GATC	6 cut(s)	15, 150, 173, 210, 291, 398
MboI	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
MboII	GAAGA	2 cut(s)	113, 149
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	186, 361
MluCI	AATT	4 cut(s)	73, 338, 379, 415
MnlI	CCTC	2 cut(s)	255, 319
MseI	TTAA	3 cut(s)	294, 387, 425
MspI	CCGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	356, 371
NdeII	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
NlaIII	CATG	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	41, 85
Ple19I	CGATCG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	13
PvuI	CGATCG	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	294, 387, 425
SatI	GCNGC	2 cut(s)	40, 84
Sau3AI	GATC	6 cut(s)	13, 148, 171, 208, 289, 396
SduI	GDGCHC	2 cut(s)	186, 361
SetI	ASST	5 cut(s)	66, 85, 95, 121, 409
SmlI	CTYRAG	3 cut(s)	78, 129, 366
SmoI	CTYRAG	3 cut(s)	78, 129, 366
Sse9I	AATT	4 cut(s)	73, 338, 379, 415
SsiI	CCGC	2 cut(s)	161, 317
SspMI	CTAG	2 cut(s)	320, 347
StyI	CCWWGG	1 cut(s)	115
TasI	AATT	4 cut(s)	73, 338, 379, 415
Tru1I	TTAA	3 cut(s)	294, 387, 425
Tru9I	TTAA	3 cut(s)	294, 387, 425
TseI	GCWGC	2 cut(s)	39, 83
TspDTI	ATGAA	3 cut(s)	17, 150, 243
XapI	RAATTY	3 cut(s)	73, 338, 379
XspI	CTAG	2 cut(s)	320, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.