Prupe.6G163800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
15717819 .. 15719389
1571 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G163800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 330 bp
ATGCATCAGCATGCTAAGGGGCTAGTATTTATTAATTCCAACGCCTTCAAGTTCTCGCTCCTCAAGACCGCGGTTAGGATCGCCTCCGTTAGAATCTTCCACCCCAAGCCCATTCTCAAGACTGAGTTCCAGCTACGAGTCCTAACCTTCCAGATCTCGCCCAATGGCATTCATGAACCAGTTGAAGTTGGGGAAAAAACTGACTTTGAAAGAAAGATACTTATTATCAAAACTGTGTTCTATGCAGATGGCATAATATTGATGGATGAGTGCTTTGATGGGTTCGAAGATCCAGCAAAGCTCAATCGCAAGTGGGAGAAACTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

9.13

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 71
AclWI GGATC 2 cut(s) 86, 284
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 3 cut(s) 49, 185, 209
AluBI AGCT 2 cut(s) 133, 301
AluI AGCT 2 cut(s) 133, 301
AlwI GGATC 2 cut(s) 86, 284
AoxI GGCC 1 cut(s) 324
AseI ATTAAT 1 cut(s) 33
AsuII TTCGAA 1 cut(s) 285
BccI CCATC 3 cut(s) 242, 256, 272
BfaI CTAG 1 cut(s) 23
BglII AGATCT 1 cut(s) 153
BmsI GCATC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 47, 101
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 179, 327
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 179, 327
BseRI GAGGAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 75
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 78, 153, 289
BspACI CCGC 2 cut(s) 69, 71
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 172
BspPI GGATC 2 cut(s) 86, 284
BspT104I TTCGAA 1 cut(s) 285
BsrI ACTGG 2 cut(s) 179, 327
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 78, 153, 289
Bst4CI ACNGT 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 15, 123
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 3 cut(s) 81, 156, 292
BstMBI GATC 3 cut(s) 78, 153, 289
BstNSI RCATGY 1 cut(s) 14
BstUI CGCG 1 cut(s) 71
BstX2I RGATCY 2 cut(s) 153, 289
BstYI RGATCY 2 cut(s) 153, 289
BsuRI GGCC 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 12
CciI TCATGA 1 cut(s) 172
Cfr42I CCGCGG 1 cut(s) 72
CviAII CATG 2 cut(s) 11, 173
CviJI RGCY 5 cut(s) 22, 109, 133, 301, 326
CviKI_1 RGCY 5 cut(s) 22, 109, 133, 301, 326
DdeI CTNAG 2 cut(s) 15, 123
DpnI GATC 3 cut(s) 80, 155, 291
DpnII GATC 3 cut(s) 78, 153, 289
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 14, 176
FaiI YATR 4 cut(s) 12, 174, 243, 254
FatI CATG 2 cut(s) 10, 172
FokI GGATG 1 cut(s) 278
FspBI CTAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 326
Hin1II CATG 2 cut(s) 14, 176
HinfI GANTC 2 cut(s) 93, 138
Hpy188III TCNNGA 4 cut(s) 64, 118, 151, 173
HpyAV CCTTC 2 cut(s) 55, 157
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 4, 245
HpyF3I CTNAG 2 cut(s) 15, 123
Hsp92II CATG 2 cut(s) 14, 176
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 3 cut(s) 78, 153, 289
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 5 cut(s) 143, 164, 192, 306, 308
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 23
MalI GATC 3 cut(s) 80, 155, 291
MboI GATC 3 cut(s) 78, 153, 289
MboII GAAGA 2 cut(s) 88, 299
MflI RGATCY 2 cut(s) 153, 289
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 71, 94
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 168
MvnI CGCG 1 cut(s) 71
NdeII GATC 3 cut(s) 78, 153, 289
NlaIII CATG 2 cut(s) 14, 176
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 14
NspV TTCGAA 1 cut(s) 285
PaeI GCATGC 1 cut(s) 14
PagI TCATGA 1 cut(s) 172
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 93
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PshBI ATTAAT 1 cut(s) 33
PsuI RGATCY 2 cut(s) 153, 289
RseI CAYNNNNRTG 1 cut(s) 9
SacII CCGCGG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 3 cut(s) 78, 153, 289
SchI GAGTC 1 cut(s) 147
SetI ASST 3 cut(s) 135, 149, 303
SfaNI GCATC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 285
SgrBI CCGCGG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 62, 116
SmoI CTYRAG 2 cut(s) 62, 116
SphI GCATGC 1 cut(s) 14
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 69, 71
SspI AATATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 285
TasI AATT 1 cut(s) 34
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 161, 189
TspGWI ACGGA 1 cut(s) 76
VspI ATTAAT 1 cut(s) 33
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.