Prupe.6G167300_v2.0.a1

Serine hydroxymethyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
17093424 .. 17096810
3387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G167300.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 603 bp
ATGCCTGATAATTTTACCACTTTATTTTTCACTTTACAGTCATCTTTGCCCAATGAAGCTGTCTATGACAAGGAGAAGCCCAGGGTCACATTGCCTAAGAAACTGAATTCTCCACTGGAGGCAGTGGATTCCGAAATTGCAGACATCATTGAGCACGAGAAAACCAGGCAATGGAAGGGGCTAGAGCTGATATCCTCAGAGAACTACACATCGCTGTTCATTGACATGGCAGAATCCTTATGCCAGAAGCGCGCTTTGGAAGCATTTCAGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAGCCTTTATCAGGGTCTCCAGCTGATTTCCAGACTGACACTAAAAAGATATCCGCTGTGTCCAACTTTTTTGAAACAATGCCGTACAGATTGAATGAGAGCACTGGCTATATTAACTACGACCAGTTGGAGAAAAGTGCCACGCTATTCCGGCCGAATTTAATAGTTGCTGGTGCTAGTGCTTATGCACATCTGTATGACTATGCACATATTCGCAAGGCTGGTGAGGACTTTATAATTTATCACAGTATAAAATTGGTAGTTCTTGCTAGATTAGATGATAATAAAGTGGACTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004372 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006563 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007623 GO:0008150 GO:0008152 GO:0008187 GO:0008219 GO:0008266 GO:0009069 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009626 GO:0009628 GO:0009853 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0012501 GO:0016020 GO:0016740 GO:0016741 GO:0016742 GO:0017144 GO:0019752 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033554 GO:0034050 GO:0042133 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0048511 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901605 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
SHMT

Protein Analysis

201

Amino Acids

22.72

Weight (kDa)

5.13

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
AccB7I CCANNNNNTGG 1 cut(s) 171
AccII CGCG 1 cut(s) 252
AciI CCGC 1 cut(s) 354
AclWI GGATC 2 cut(s) 269, 282
AcoI YGGCCR 1 cut(s) 452
AcsI RAATTY 2 cut(s) 106, 457
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 171, 311
AgsI TTSAA 2 cut(s) 374, 394
AjnI CCWGG 2 cut(s) 80, 164
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 59, 187, 323
AluI AGCT 3 cut(s) 59, 187, 323
Alw21I GWGCWC 2 cut(s) 156, 404
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 269, 282
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 2 cut(s) 106, 457
Asp700I GAANNNNTTC 1 cut(s) 264
AspLEI GCGC 2 cut(s) 252, 254
AsuHPI GGTGA 1 cut(s) 536
BamHI GGATCC 1 cut(s) 274
BauI CACGAG 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 156, 404
BbvI GCAGC 1 cut(s) 313
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 82, 166
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 3 cut(s) 182, 477, 570
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 82, 166
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 82, 166
BpmI CTGGAG 2 cut(s) 137, 303
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 80, 81
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 311
Bse1I ACTGG 3 cut(s) 120, 409, 424
Bse3DI GCAATG 2 cut(s) 89, 176
BseBI CCWGG 2 cut(s) 82, 166
BseDI CCNNGG 2 cut(s) 80, 81
BseLI CCNNNNNNNGG 2 cut(s) 171, 311
BseMI GCAATG 2 cut(s) 89, 176
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 3 cut(s) 120, 409, 424
BsePI GCGCGC 1 cut(s) 250
BseX3I CGGCCG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 1 cut(s) 454
BsiEI CGRYCG 1 cut(s) 455
BsiHKAI GWGCWC 2 cut(s) 156, 404
BsiSI CCGG 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 171, 311
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 454
Bso31I GGTCTC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 156, 404
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 354
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 209
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 2 cut(s) 269, 282
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 89, 176
BsrI ACTGG 3 cut(s) 120, 409, 424
BssECI CCNNGG 2 cut(s) 80, 81
BssHII GCGCGC 1 cut(s) 250
BssMI GATC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 82, 166
Bst4CI ACNGT 3 cut(s) 39, 548, 596
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 96, 196
BstENI CCTNNNNNAGG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 2 cut(s) 252, 254
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 274
BstMCI CGRYCG 1 cut(s) 455
BstMWI GCNNNNNNNGC 3 cut(s) 249, 260, 451
BstNI CCWGG 2 cut(s) 82, 166
BstSCI CCNGG 2 cut(s) 80, 164
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 285
BstYI RGATCY 1 cut(s) 274
BstZI CGGCCG 1 cut(s) 452
BsuRI GGCC 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 113, 129, 402
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 252, 254
Csp6I GTAC 1 cut(s) 385
CviAII CATG 1 cut(s) 226
CviJI RGCY 9 cut(s) 59, 79, 181, 187, 304, 323, 408, 454, 521
CviKI_1 RGCY 9 cut(s) 59, 79, 181, 187, 304, 323, 408, 454, 521
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 96, 196
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 452
EagI CGGCCG 1 cut(s) 452
EclXI CGGCCG 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 321
Eco32I GATATC 2 cut(s) 192, 351
Eco52I CGGCCG 1 cut(s) 452
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 80, 164
EcoRV GATATC 2 cut(s) 192, 351
FaeI CATG 1 cut(s) 229
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 3 cut(s) 182, 477, 570
GlaI GCGC 2 cut(s) 251, 253
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 2 cut(s) 137, 303
HaeIII GGCC 1 cut(s) 454
HapII CCGG 1 cut(s) 451
HhaI GCGC 2 cut(s) 252, 254
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 2 cut(s) 250, 252
HinP1I GCGC 2 cut(s) 250, 252
HinfI GANTC 3 cut(s) 128, 233, 291
HpaII CCGG 1 cut(s) 451
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 2 cut(s) 133, 199
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 592
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 3 cut(s) 39, 548, 596
HpyCH4V TGCA 4 cut(s) 140, 301, 488, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 260, 451
HpyF3I CTNAG 2 cut(s) 96, 196
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 2 cut(s) 250, 252
Kzo9I GATC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 313
MaeI CTAG 3 cut(s) 182, 477, 570
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 156, 404
MluCI AATT 6 cut(s) 10, 106, 135, 457, 537, 554
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 3 cut(s) 252, 387, 408
MnlI CCTC 3 cut(s) 112, 205, 520
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 2 cut(s) 414, 461
MslI CAYNNNNRTG 2 cut(s) 224, 495
MspA1I CMGCKG 2 cut(s) 323, 356
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 2 cut(s) 82, 166
MvaI CCWGG 2 cut(s) 82, 166
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 249, 260, 451
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 85
PasI CCCWGGG 1 cut(s) 81
PauI GCGCGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 2 cut(s) 128, 233
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PsiI TTATAA 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 80, 164
PspGI CCWGG 2 cut(s) 80, 164
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 274
PteI GCGCGC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 2 cut(s) 224, 495
SaqAI TTAA 2 cut(s) 414, 461
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 2 cut(s) 82, 166
SduI GDGCHC 2 cut(s) 156, 404
SetI ASST 3 cut(s) 61, 189, 325
SmiMI CAYNNNNRTG 2 cut(s) 224, 495
Sse9I AATT 6 cut(s) 10, 106, 135, 457, 537, 554
SsiI CCGC 1 cut(s) 354
SspMI CTAG 3 cut(s) 182, 477, 570
StyD4I CCNGG 2 cut(s) 80, 164
TaaI ACNGT 3 cut(s) 39, 548, 596
TasI AATT 6 cut(s) 10, 106, 135, 457, 537, 554
TfiI GAWTC 2 cut(s) 128, 233
Tru1I TTAA 2 cut(s) 414, 461
Tru9I TTAA 2 cut(s) 414, 461
TscAI CASTG 3 cut(s) 120, 129, 409
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 69, 208
TspRI CASTG 3 cut(s) 120, 129, 409
Van91I CCANNNNNTGG 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 2 cut(s) 106, 457
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 3 cut(s) 182, 477, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.