Prupe.6G167600_v2.0.a1

Ras-induced vulval development antagonist

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
17122784 .. 17123904
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G167600.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 786 bp
ATGGACAGGAACGGAAGGCGATCAAAGTCATTGGAGTCTGACGAGGAGCTGAATGGGCTGAGCTTCGAGGAGTGTAGAAGGCTCAAGAGGGTTGAGAACGATGAATTCAAATTGGATGACAAGGCTGATGAGATTTCATTGTGGTACGGTAAGGTGGAAAAGAGCGAATCGGGCGAGAAGGCCAAGTCTGAATCGGAGTCGGAATCAGAGAATTTGAGTGATAGCGAGTCGGAAAGCAAGAGGGATGATGCATCCGAATCTGATGAAGAAGATGATTGCAAACTGAAAAAGAAGTCTAGAAAGAGGAGCAAGAGTAGAAAAGAAATGAGAAGAAGAATGAAGAGTAGGCGTAGCATTAGCAATTATGATGAGAGCGAAGGAAGTGAAAGCCAGGGTTCATATTCTAATTCAGAGGATCACTTGAGGTCGAAGAAGAAGAAGAAGCAAAAGTCCCCTCGCGAGAGTAAGACAAAGAAAGAGTCTAAAACGGATAGGGAGAGTTCCAAGTCGAGGAAGGAAAAGGAGGTGATAGGGGATGAGAGTAATGTGCAGGCATTGAAGCTGAAAGGGATTTTCAAGGCCCAGAAGAAGCCTACATTGGACAATGAGCCTGTGAGGATGAATGCCATTCGTATTAGGAAGGAAAACCAGGTTTATAGTGCTGAGGACAAGCAGGCTTTGGCCATGTTTAACTATGAAGAGAATGCGAAGCATGAGCACAAGGTTATGGGGGATTTACAGTGGTTGGTTAAGCACCATATTGAGCAGGATGTCGATCCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SynMuv_product

Protein Analysis

262

Amino Acids

30.46

Weight (kDa)

8.54

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 459
AclWI GGATC 2 cut(s) 423, 770
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 2 cut(s) 104, 211
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 510
AgsI TTSAA 3 cut(s) 109, 559, 577
AjnI CCWGG 2 cut(s) 390, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 3 cut(s) 49, 63, 562
AluI AGCT 3 cut(s) 49, 63, 562
Alw21I GWGCWC 1 cut(s) 720
AlwI GGATC 2 cut(s) 423, 770
AoxI GGCC 3 cut(s) 180, 579, 681
ApoI RAATTY 2 cut(s) 104, 211
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 1 cut(s) 538
BalI TGGCCA 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 720
BbvCI CCTCAGC 1 cut(s) 663
BciT130I CCWGG 2 cut(s) 392, 650
BfaI CTAG 1 cut(s) 297
BlpI GCTNAGC 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 392, 650
BmgT120I GGNCC 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 392, 650
BmsI GCATC 2 cut(s) 238, 260
Bpu10I CCTNAGC 1 cut(s) 663
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 2 cut(s) 68, 442
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 2 cut(s) 392, 650
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 6 cut(s) 121, 250, 251, 541, 624, 775
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 50, 654
BseRI GAGGAG 3 cut(s) 59, 83, 319
BsgI GTGCAG 1 cut(s) 569
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 3 cut(s) 182, 581, 683
BsiHKAI GWGCWC 1 cut(s) 720
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 436
BsmI GAATGC 2 cut(s) 628, 709
BsnI GGCC 3 cut(s) 182, 581, 683
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 3 cut(s) 20, 415, 775
Bsp1720I GCTNAGC 1 cut(s) 59
Bsp68I TCGCGA 1 cut(s) 459
BspANI GGCC 3 cut(s) 182, 581, 683
BspCNI CTCAG 2 cut(s) 51, 655
BspFNI CGCG 1 cut(s) 459
BspPI GGATC 2 cut(s) 423, 770
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 3 cut(s) 20, 415, 775
Bst2UI CCWGG 2 cut(s) 392, 650
Bst4CI ACNGT 2 cut(s) 149, 741
Bst6I CTCTTC 2 cut(s) 335, 693
BstC8I GCNNGC 2 cut(s) 552, 675
BstDEI CTNAG 2 cut(s) 59, 663
BstF5I GGATG 6 cut(s) 121, 250, 251, 541, 624, 775
BstFNI CGCG 1 cut(s) 459
BstKTI GATC 3 cut(s) 23, 418, 778
BstMBI GATC 3 cut(s) 20, 415, 775
BstMWI GCNNNNNNNGC 2 cut(s) 55, 171
BstNI CCWGG 2 cut(s) 392, 650
BstSCI CCNGG 2 cut(s) 390, 648
BstUI CGCG 1 cut(s) 459
BsuRI GGCC 3 cut(s) 182, 581, 683
BtsCI GGATG 6 cut(s) 121, 250, 251, 541, 624, 775
BtsIMutI CAGTG 1 cut(s) 746
BtuMI TCGCGA 1 cut(s) 459
Cac8I GCNNGC 2 cut(s) 552, 675
Cfr13I GGNCC 1 cut(s) 580
CsiI ACCWGGT 1 cut(s) 648
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 685, 713
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 59, 663
DpnI GATC 3 cut(s) 22, 417, 777
DpnII GATC 3 cut(s) 20, 415, 775
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 335, 693
EarI CTCTTC 2 cut(s) 335, 693
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 390, 648
EcoT22I ATGCAT 1 cut(s) 253
FaeI CATG 2 cut(s) 688, 716
FaiI YATR 8 cut(s) 366, 400, 657, 686, 696, 714, 728, 759
FaqI GGGAC 1 cut(s) 436
FatI CATG 2 cut(s) 684, 712
FokI GGATG 6 cut(s) 128, 238, 257, 548, 631, 782
FspBI CTAG 1 cut(s) 297
HaeIII GGCC 3 cut(s) 182, 581, 683
Hin1II CATG 2 cut(s) 688, 716
HinfI GANTC 8 cut(s) 35, 167, 191, 197, 203, 227, 257, 479
HphI GGTGA 1 cut(s) 538
Hpy188I TCNGA 9 cut(s) 40, 190, 196, 202, 208, 232, 256, 262, 412
Hpy188III TCNNGA 3 cut(s) 85, 297, 458
HpyAV CCTTC 6 cut(s) 9, 72, 172, 371, 508, 634
HpyCH4III ACNGT 2 cut(s) 149, 741
HpyCH4V TGCA 3 cut(s) 251, 279, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 171
HpyF3I CTNAG 2 cut(s) 59, 663
Hsp92II CATG 2 cut(s) 688, 716
Kzo9I GATC 3 cut(s) 20, 415, 775
LmnI GCTCC 2 cut(s) 46, 306
LpnPI CCDG 9 cut(s) 377, 404, 536, 596, 624, 635, 659, 662, 752
LweI GCATC 2 cut(s) 238, 260
MabI ACCWGGT 1 cut(s) 648
MaeI CTAG 1 cut(s) 297
MalI GATC 3 cut(s) 22, 417, 777
MboI GATC 3 cut(s) 20, 415, 775
MhlI GDGCHC 1 cut(s) 720
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 5 cut(s) 104, 110, 211, 361, 406
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 4 cut(s) 44, 206, 236, 488
MmeI TCCRAC 2 cut(s) 180, 210
Mox20I TGGCCA 1 cut(s) 683
Mph1103I ATGCAT 1 cut(s) 253
MscI TGGCCA 1 cut(s) 683
MseI TTAA 3 cut(s) 690, 750, 784
Msp20I TGGCCA 1 cut(s) 683
MspR9I CCNGG 2 cut(s) 392, 650
Mva1269I GAATGC 2 cut(s) 628, 709
MvaI CCWGG 2 cut(s) 392, 650
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 55, 171
NdeII GATC 3 cut(s) 20, 415, 775
NlaIII CATG 2 cut(s) 688, 716
NruI TCGCGA 1 cut(s) 459
NsiI ATGCAT 1 cut(s) 253
PctI GAATGC 2 cut(s) 628, 709
PfeI GAWTC 4 cut(s) 167, 191, 203, 257
PleI GAGTC 4 cut(s) 43, 205, 235, 487
PpsI GAGTC 4 cut(s) 43, 205, 235, 487
Psp6I CCWGG 2 cut(s) 390, 648
PspGI CCWGG 2 cut(s) 390, 648
PspPI GGNCC 1 cut(s) 580
RruI TCGCGA 1 cut(s) 459
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 3 cut(s) 690, 750, 784
Sau3AI GATC 3 cut(s) 20, 415, 775
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 4 cut(s) 44, 206, 236, 488
ScrFI CCNGG 2 cut(s) 392, 650
SduI GDGCHC 1 cut(s) 720
SetI ASST 8 cut(s) 51, 65, 156, 428, 528, 564, 654, 726
SexAI ACCWGGT 1 cut(s) 648
SfaNI GCATC 2 cut(s) 238, 260
SmlI CTYRAG 2 cut(s) 83, 421
SmoI CTYRAG 2 cut(s) 83, 421
Sse9I AATT 5 cut(s) 104, 110, 211, 361, 406
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 390, 648
TaaI ACNGT 2 cut(s) 149, 741
TaqI TCGA 4 cut(s) 66, 428, 509, 774
TasI AATT 5 cut(s) 104, 110, 211, 361, 406
TfiI GAWTC 4 cut(s) 167, 191, 203, 257
Tru1I TTAA 3 cut(s) 690, 750, 784
Tru9I TTAA 3 cut(s) 690, 750, 784
TscAI CASTG 1 cut(s) 746
TspDTI ATGAA 7 cut(s) 117, 126, 279, 353, 387, 635, 711
TspGWI ACGGA 2 cut(s) 27, 503
TspRI CASTG 1 cut(s) 746
XapI RAATTY 2 cut(s) 104, 211
XbaI TCTAGA 1 cut(s) 296
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.