Prupe.6G174400_v2.0.a1

Cullin-associated NEDD8-dissociated protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
17892645 .. 17894244
1600 bp
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UTR
Exon/CDS
Intron
Prupe.6G174400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 555 bp
ATGAAACTCAAGGAAGATGAGTATGTTTTCAAGCTGTGTGAGGTTATGTTTGACTCGGAGTCACAGGCTTGTCCAAAATTAATTGACAGGTTTGAAGAGAGGGAGGAAAATGTCAATGTAAACCAGAATGAATGTCAGTGGATCATCTCACTTCACAGGATTAATTATTTTGCTGCAGATGGATTTTTTAATACATTCATTGAACTGTTGCAGCAAACTGAAAATGTTACAAAAGGACGGATTGAGATAAATGATCAGAGTCCAAAATGGTTATTGAAGCAAGAAGCGCCAAAGATTGTCAGATCTATAAATAGGCAGCTACATGAGAAATCTATCAAGACAAAGGATAAGTCTTTTACCTCCAATTTAAAGATTGAAGCTCTTATATCTGCGCAATTGGTGCTGGCTTCACATTCTCCTTCTGTGTTTTCCATCCTTATATCAAGTCCTGTTGTATCTGCTGTGGGAGAGCGTTATTACAAAGTCACAGCTGAAGCATTAAGGGTGTGTAGGGAATTTTTCCATGTTGTTCGCCTGAATATCGAGGTGTATTAG

Protein Analysis

185

Amino Acids

21.42

Weight (kDa)

6.45

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 393
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 513
AgsI TTSAA 5 cut(s) 31, 95, 203, 277, 377
AhdI GACNNNNNGTC 1 cut(s) 58
AluBI AGCT 4 cut(s) 34, 319, 380, 491
AluI AGCT 4 cut(s) 34, 319, 380, 491
AlwI GGATC 1 cut(s) 149
ApeKI GCWGC 3 cut(s) 173, 211, 316
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AseI ATTAAT 2 cut(s) 80, 162
AspLEI GCGC 2 cut(s) 289, 394
BbvI GCAGC 3 cut(s) 160, 223, 328
BccI CCATC 2 cut(s) 173, 440
BclI TGATCA 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 290
BglII AGATCT 1 cut(s) 302
BisI GCNGC 3 cut(s) 174, 212, 317
BlsI GCNGC 3 cut(s) 175, 213, 318
BmeRI GACNNNNNGTC 1 cut(s) 58
BseGI GGATG 1 cut(s) 432
BseXI GCAGC 3 cut(s) 160, 223, 328
Bsp143I GATC 3 cut(s) 141, 253, 302
BspMAI CTGCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 149
BssMI GATC 3 cut(s) 141, 253, 302
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 405
BstF5I GGATG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 289, 394
BstKTI GATC 3 cut(s) 144, 256, 305
BstMBI GATC 3 cut(s) 141, 253, 302
BstMWI GCNNNNNNNGC 2 cut(s) 286, 400
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 160, 223, 328
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtsCI GGATG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 2 cut(s) 289, 394
CviAII CATG 2 cut(s) 323, 524
CviJI RGCY 6 cut(s) 34, 68, 319, 380, 407, 491
CviKI_1 RGCY 6 cut(s) 34, 68, 319, 380, 407, 491
DpnI GATC 3 cut(s) 143, 255, 304
DpnII GATC 3 cut(s) 141, 253, 302
DraI TTTAAA 1 cut(s) 369
DriI GACNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 513
FaeI CATG 2 cut(s) 326, 527
FaiI YATR 7 cut(s) 24, 47, 308, 324, 386, 440, 525
FatI CATG 2 cut(s) 322, 523
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 174, 212, 317
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 3 cut(s) 174, 212, 317
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 2 cut(s) 288, 393
GluI GCNGC 3 cut(s) 174, 212, 317
HaeII RGCGCY 1 cut(s) 290
HhaI GCGC 2 cut(s) 289, 394
Hin1II CATG 2 cut(s) 326, 527
Hin6I GCGC 2 cut(s) 287, 392
HinP1I GCGC 2 cut(s) 287, 392
HinfI GANTC 3 cut(s) 53, 59, 259
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 58, 258, 302
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 176, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 286, 400
Hsp92II CATG 2 cut(s) 326, 527
HspAI GCGC 2 cut(s) 287, 392
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 141, 253, 302
LpnPI CCDG 7 cut(s) 50, 73, 137, 142, 389, 462, 548
Lsp1109I GCAGC 3 cut(s) 160, 223, 328
MaeIII GTNAC 3 cut(s) 60, 226, 484
MalI GATC 3 cut(s) 143, 255, 304
MboI GATC 3 cut(s) 141, 253, 302
MboII GAAGA 2 cut(s) 26, 107
MfeI CAATTG 1 cut(s) 395
MflI RGATCY 1 cut(s) 302
MluCI AATT 6 cut(s) 77, 81, 163, 364, 395, 515
MlyI GAGTC 3 cut(s) 47, 68, 268
MnlI CCTC 5 cut(s) 34, 93, 97, 370, 538
MseI TTAA 5 cut(s) 80, 162, 189, 368, 500
MspA1I CMGCKG 1 cut(s) 491
MunI CAATTG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 286, 400
NdeII GATC 3 cut(s) 141, 253, 302
NlaIII CATG 2 cut(s) 326, 527
NmuCI GTSAC 2 cut(s) 60, 484
NsbI TGCGCA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 175, 213, 318
PleI GAGTC 3 cut(s) 47, 67, 267
PpsI GAGTC 3 cut(s) 47, 67, 267
PshBI ATTAAT 2 cut(s) 80, 162
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 491
SaqAI TTAA 5 cut(s) 80, 162, 189, 368, 500
SatI GCNGC 3 cut(s) 174, 212, 317
Sau3AI GATC 3 cut(s) 141, 253, 302
SchI GAGTC 3 cut(s) 47, 68, 268
SetI ASST 8 cut(s) 36, 45, 92, 321, 362, 382, 493, 549
SfcI CTRYAG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 6 cut(s) 77, 81, 163, 364, 395, 515
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 543
TasI AATT 6 cut(s) 77, 81, 163, 364, 395, 515
Tru1I TTAA 5 cut(s) 80, 162, 189, 368, 500
Tru9I TTAA 5 cut(s) 80, 162, 189, 368, 500
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 2 cut(s) 60, 484
TseI GCWGC 3 cut(s) 173, 211, 316
Tsp45I GTSAC 2 cut(s) 60, 484
TspDTI ATGAA 3 cut(s) 17, 144, 187
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 143
VspI ATTAAT 2 cut(s) 80, 162
XapI RAATTY 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.