Prupe.6G174700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
17915968 .. 17916607
640 bp
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UTR
Exon/CDS
Intron
Prupe.6G174700.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 381 bp
ATGTATGAAATACCTGAGACACATGTGCTGCAACTGAAGACAGAAGGTGAGAATACCCCAACTGACAACAAATTCCTTCCAGTACTTATAAGGCTTATTTATGTACATGCCTCATGTGCTTTCAAAGTTGTCTCAGATTACCACATGTTCTTTGAAACGTCTCAAAATACCACCTACACTTTTAATAACTGTCTCACGTTCAATATTCCGTCAGTGTTAAGAGACTTTCCGTTACGTGATGTGGCCTCCACTTCTTGGGGTATGGGTTTGCTTCTAGTCTTCTTTCCAAAAGACAATGGCACAACCATTGTTGACAAAAGTAACAAGCTTTTCTCTTTTTCATCGTCATCGTCCCCATCTCATTCATGTTCTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.19

Weight (kDa)

6.02

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 255
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 84, 105
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 2 cut(s) 22, 144
AgsI TTSAA 3 cut(s) 124, 155, 202
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 5 cut(s) 11, 136, 165, 197, 216
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 44, 271
BbvI GCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 364
BcoDI GTCTC 5 cut(s) 11, 136, 165, 197, 216
BfaI CTAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 84
BpiI GAAGAC 2 cut(s) 44, 271
BsaAI YACGTR 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 6, 147
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 245
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 5 cut(s) 11, 136, 165, 197, 216
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 103
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 7, 146
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 15, 133
BstMAI GTCTC 5 cut(s) 11, 136, 165, 197, 216
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 3 cut(s) 26, 110, 148
BstV1I GCAGC 1 cut(s) 15
BstV2I GAAGAC 2 cut(s) 44, 271
BsuRI GGCC 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 219
Csp6I GTAC 2 cut(s) 83, 104
CviAII CATG 5 cut(s) 23, 107, 114, 145, 366
CviJI RGCY 3 cut(s) 94, 245, 328
CviKI_1 RGCY 3 cut(s) 94, 245, 328
CviQI GTAC 2 cut(s) 83, 104
DdeI CTNAG 2 cut(s) 15, 133
Eco57I CTGAAG 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 5 cut(s) 26, 110, 117, 148, 369
FaqI GGGAC 1 cut(s) 337
FatI CATG 5 cut(s) 22, 106, 113, 144, 365
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 5 cut(s) 26, 110, 117, 148, 369
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 326
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 38, 86
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 3 cut(s) 158, 197, 235
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 15, 133
HpySE526I ACGT 3 cut(s) 158, 197, 235
Hsp92II CATG 5 cut(s) 26, 110, 117, 148, 369
LpnPI CCDG 2 cut(s) 27, 93
Lsp1109I GCAGC 1 cut(s) 15
MaeI CTAG 1 cut(s) 275
MaeII ACGT 3 cut(s) 158, 197, 235
MaeIII GTNAC 2 cut(s) 231, 320
MboII GAAGA 4 cut(s) 49, 271, 363, 366
MluCI AATT 1 cut(s) 71
MnlI CCTC 2 cut(s) 121, 256
MseI TTAA 2 cut(s) 183, 218
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 5 cut(s) 26, 110, 117, 148, 369
NspI RCATGY 3 cut(s) 26, 110, 148
PciI ACATGT 2 cut(s) 22, 144
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 236
PscI ACATGT 2 cut(s) 22, 144
PsiI TTATAA 1 cut(s) 89
RsaI GTAC 2 cut(s) 84, 105
RsaNI GTAC 2 cut(s) 83, 104
SaqAI TTAA 2 cut(s) 183, 218
SatI GCNGC 1 cut(s) 29
ScaI AGTACT 1 cut(s) 84
SetI ASST 7 cut(s) 16, 49, 161, 176, 200, 238, 330
Sse9I AATT 1 cut(s) 71
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 3 cut(s) 161, 200, 238
TasI AATT 1 cut(s) 71
TatI WGTACW 2 cut(s) 82, 103
Tru1I TTAA 2 cut(s) 183, 218
Tru9I TTAA 2 cut(s) 183, 218
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 21, 330, 354, 366
TspGWI ACGGA 2 cut(s) 198, 219
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 71
XceI RCATGY 3 cut(s) 26, 110, 148
XspI CTAG 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.