Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18098508 .. 18099112

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G176400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAGGAGAGTATTGCTGTTCTTCATCTTCATCGTCTTCAACAACCACAACAACAAGCATAGAGAAGGGCAAGCAGAGGCAAAACCAGCAACAACAACAACAAGTAGGAGGCAACCATGATCATCGTCATCAAGAAAAGCAATATAGAGGGATAAGGATGAGGAAGGAGGGGAAGTGGGTGGCTGAGATTAGAGAACCTAACAAGAGGTCTCGAATTTGGCTTGGTTCTTACACGACGCCGGTTGCCGCCACCCGAGCATATGAAACCACCGTTTGCCCTTATACGCCGCAGCTACACAACATGTCGGCCGCTTCGATACGAAATAAGGCTACGGAGGTTGGGGCAAAGGTCGACGCCGTCGAAACTGCTCACTGCTCACCAACATCGCAGTCGAAAACGACGTCGAGCCTAGTGAATTCCCAGAAGCCTAATTTAAATAAGTATCTTGACCCAGAAAACTCTGATGAAAAATTAATTGAAAAAAAGAGAGGAAGAAAGAGAGAAGGGAAGGAAATAATATATATATATATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

180

Amino Acids

20.31

Weight (kDa)

9.51

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	538
AatII	GACGTC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	3 cut(s)	249, 290, 312
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	2 cut(s)	216, 418
AcyI	GRCGYC	3 cut(s)	239, 357, 404
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	42, 482
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	216, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AseI	ATTAAT	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	4 cut(s)	249, 290, 293, 312
BlsI	GCNGC	4 cut(s)	250, 291, 294, 313
BmeT110I	CYCGRG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	30
BsaHI	GRCGYC	3 cut(s)	239, 357, 404
BsaI	GGTCTC	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse118I	RCCGGY	1 cut(s)	241
BseGI	GGATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	177
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	304
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	3 cut(s)	249, 290, 312
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	3 cut(s)	239, 357, 404
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	3 cut(s)	239, 357, 404
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 257
BstNSI	RCATGY	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	30
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	2 cut(s)	247, 365
CviAII	CATG	2 cut(s)	119, 304
CviJI	RGCY	7 cut(s)	185, 223, 295, 311, 332, 411, 430
CviKI_1	RGCY	7 cut(s)	185, 223, 295, 311, 332, 411, 430
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	216
Eco52I	CGGCCG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	418
FaeI	CATG	2 cut(s)	122, 307
FatI	CATG	2 cut(s)	118, 303
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	249, 290, 293, 312
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	249, 290, 293, 312
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	4 cut(s)	249, 290, 293, 312
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	2 cut(s)	247, 365
Hin1I	GRCGYC	3 cut(s)	239, 357, 404
Hin1II	CATG	2 cut(s)	122, 307
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	3 cut(s)	134, 213, 449
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	5 cut(s)	241, 359, 365, 406, 409
HpyAV	CCTTC	4 cut(s)	61, 160, 500, 505
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 257
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	3 cut(s)	239, 357, 404
Hsp92II	CATG	2 cut(s)	122, 307
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	101, 255, 437, 468
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	404
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	15, 21, 30, 507
MluCI	AATT	5 cut(s)	216, 418, 433, 473, 477
MnlI	CCTC	8 cut(s)	72, 104, 143, 156, 163, 201, 331, 485
MseI	TTAA	2 cut(s)	437, 476
MspI	CCGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	88, 257
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	122, 307
NspI	RCATGY	1 cut(s)	307
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	3 cut(s)	314, 360, 401
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	250, 291, 294, 313
PscI	ACATGT	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	476
PsiI	TTATAA	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	437, 476
SatI	GCNGC	4 cut(s)	249, 290, 293, 312
Sau3AI	GATC	1 cut(s)	121
SetI	ASST	6 cut(s)	202, 212, 297, 342, 354, 407
SmiI	ATTTAAAT	1 cut(s)	438
Sse9I	AATT	5 cut(s)	216, 418, 433, 473, 477
SsiI	CCGC	3 cut(s)	249, 290, 312
SspMI	CTAG	1 cut(s)	413
SwaI	ATTTAAAT	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	6 cut(s)	214, 317, 354, 363, 395, 407
TasI	AATT	5 cut(s)	216, 418, 433, 473, 477
TauI	GCSGC	3 cut(s)	251, 292, 314
Tru1I	TTAA	2 cut(s)	437, 476
Tru9I	TTAA	2 cut(s)	437, 476
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	15, 21, 279, 483
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	380
Tth111I	GACNNNGTC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	476
XapI	RAATTY	2 cut(s)	216, 418
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	413
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.