Prupe.6G191300_v2.0.a1

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
19853762 .. 19854929
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G191300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 513 bp
ATGTGGTCCCGTAAAATTTGGTTTAGACCTCGAATCGTACGCAAAACCAATGTTAGCCATTTAAAAAAGAAAAAAAAAAATCATACCAGGCCTTTAAAGTTCAAAAATTCACAATGTGGTTTATTTTCCTTTGCGATTGATGCTTCCTTTTCGCCCTTACTAGTTGATTATGATTCCTTGAATGCAATTCAACTTCTTCTCAAGGAGGAGACCTGTTATGCGGCCGAATGGGTCCTTGTTGAGGAAATTCGACGACTTCTTGTATCTACACCGTCCTATTCAATTCGTTTCGCTCCCCGCACAACTAATGGGGTTGCGGATCGTCTTGGTTTACCAACCCACCATCTTGGTTTAAAGATTGTCTGCGTAAGGATTATCCTGATATTTTTGACGTTTGACTCTCTCGTAATCTCTGACATATGTGGTACTTTTTTCTCTGATATTTTGTCCTTATGGGTTTTCTTAAGAGAAGTTTTAACGAGGCCATCTTATAACGATTTGATTATCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

171

Amino Acids

19.75

Weight (kDa)

9.73

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AciI CCGC 3 cut(s) 221, 298, 317
AclWI GGATC 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 3 cut(s) 15, 106, 246
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 2 cut(s) 39, 427
AfiI CCNNNNNNNGG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 463
AgsI TTSAA 4 cut(s) 103, 181, 191, 282
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 327
AoxI GGCC 3 cut(s) 89, 222, 482
ApoI RAATTY 3 cut(s) 15, 106, 246
AspS9I GGNCC 2 cut(s) 6, 232
AvaII GGWCC 2 cut(s) 6, 232
BccI CCATC 2 cut(s) 351, 493
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 463
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 6, 232
BmgT120I GGNCC 2 cut(s) 6, 232
BmiI GGNNCC 2 cut(s) 8, 233
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 221
BseX3I CGGCCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 3 cut(s) 91, 224, 484
BsiEI CGRYCG 1 cut(s) 225
BsiWI CGTACG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 3 cut(s) 91, 224, 484
Bso31I GGTCTC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 3 cut(s) 221, 298, 317
BspANI GGCC 3 cut(s) 91, 224, 484
BspLI GGNNCC 2 cut(s) 8, 233
BspPI GGATC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 463
BspTNI GGTCTC 1 cut(s) 203
BssMI GATC 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 463
BstENI CCTNNNNNAGG 1 cut(s) 239
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 319
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 347
BstZI CGGCCG 1 cut(s) 222
BsuRI GGCC 3 cut(s) 91, 224, 484
Cfr13I GGNCC 2 cut(s) 6, 232
Csp6I GTAC 2 cut(s) 38, 426
CviJI RGCY 4 cut(s) 57, 91, 224, 484
CviKI_1 RGCY 4 cut(s) 57, 91, 224, 484
CviQI GTAC 2 cut(s) 38, 426
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DraI TTTAAA 3 cut(s) 63, 96, 354
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 222
EagI CGGCCG 1 cut(s) 222
EclXI CGGCCG 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 6, 232
Eco52I CGGCCG 1 cut(s) 222
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 86
FaiI YATR 7 cut(s) 84, 171, 219, 419, 421, 454, 492
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 3 cut(s) 91, 224, 484
HinfI GANTC 3 cut(s) 33, 173, 398
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 415, 439
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 1 cut(s) 332
Hpy99I CGWCG 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 392
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 4 cut(s) 73, 100, 226, 392
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 392
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 1 cut(s) 188
MluCI AATT 5 cut(s) 15, 106, 186, 246, 282
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 4 cut(s) 39, 199, 235, 474
MseI TTAA 5 cut(s) 62, 95, 353, 464, 476
MspCI CTTAAG 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeI CATATG 1 cut(s) 419
NdeII GATC 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 8, 233
PceI AGGCCT 1 cut(s) 91
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 33, 173
Pfl23II CGTACG 1 cut(s) 37
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PpuMI RGGWCCY 1 cut(s) 232
PsiI TTATAA 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspLI CGTACG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 8, 233
PspPI GGNCC 2 cut(s) 6, 232
PspPPI RGGWCCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 39, 427
RsaNI GTAC 2 cut(s) 38, 426
SaqAI TTAA 5 cut(s) 62, 95, 353, 464, 476
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 6, 232
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 88
SetI ASST 3 cut(s) 31, 215, 395
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 2 cut(s) 6, 232
SmlI CTYRAG 2 cut(s) 200, 463
SmoI CTYRAG 2 cut(s) 200, 463
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 5 cut(s) 15, 106, 186, 246, 282
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 3 cut(s) 221, 298, 317
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 395
TaqI TCGA 2 cut(s) 31, 250
TasI AATT 5 cut(s) 15, 106, 186, 246, 282
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 33, 173
Tru1I TTAA 5 cut(s) 62, 95, 353, 464, 476
Tru9I TTAA 5 cut(s) 62, 95, 353, 464, 476
Vha464I CTTAAG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 6, 232
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 3 cut(s) 15, 106, 246
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.