Prupe.6G199300_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
20596971 .. 20598099
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G199300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 909 bp
ATGGCATCAGTTGCTGCAGACATCTTCATTGGCAAATTTGTAGCCATTCTTGAGAGTGAAGCAGCCTCCATAGCGGGTGTTGGTCATCAAGTTGATGAGATTAAGCAGGAGTTGGTGGTCATGAAATCCTTCTTAGAGGATGTCAATGGCGGCAATAAAGCACACACAGAAGTAGAGAAAGCGTGGGTCGCAAGCAACCAAGCGGAGTCTTCTCTTTACCATAAGGATGATGAACTCGTTGGGATTGAAGGCGGTAAGAAAATTTTAATGGGATGGCTGATGAACAAAGAGCAACGCCAAACTATTGTCTCCGTGTTGGGGATGGGAGGATCAGGCAAGACAACTCTAGTTGCAAGGGCTTTCACCAACGACGCTGTGAAGAGCCATTTCGAGTGCTATGCTTGGATTACTAAGATTGATCAAAGAATTCCACACAAAGCAAGGAAAGAAGAGGTCCCTGCAGACATAAATGTCATGAGCTATAACGAATTGCTCGAGATTTTGGTGAACTACTTGGAAACTAAAAGGTACCTAGTTGTATTGGATGATGTGTGGGATATACTTCTATGGGAGAGAATAAGGTTTTCATTTCCGGATAAACAACTTGGAAGTCGAGTCATGCTTACAACTCGAAGAGAAGACATAGCATCCTATTCTTTTGGAGTTGAAAGCCATGTTCACAAGATCCCATCGCTGGGAAAGAGTGTTGCGTGGGAGCTCTTCAGCATGAAAGCATTCTCAAGTTATCATAACAAATCTTGTTCACCTGAACTTCTGCCATTAGCTCGGGAACTTGTGGAAAAGTGTGAAGGCCTACCTCTTGCAATTGTAGCCTTAAGTGGTCTTTTGTCTTCTAAAAAGTCACTCACAGAGTGGAGCAGAGTCTACAATGATGGAATAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

303

Amino Acids

33.82

Weight (kDa)

5.97

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 528
AccI GTMKAC 1 cut(s) 885
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 4 cut(s) 74, 150, 203, 252
AclWI GGATC 2 cut(s) 337, 679
AcsI RAATTY 3 cut(s) 35, 261, 426
AcuI CTGAAG 1 cut(s) 706
AdeI CACNNNGTG 1 cut(s) 873
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 3 cut(s) 318, 694, 695
AflII CTTAAG 1 cut(s) 835
AgsI TTSAA 2 cut(s) 248, 668
AluBI AGCT 3 cut(s) 480, 718, 785
AluI AGCT 3 cut(s) 480, 718, 785
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 2 cut(s) 337, 679
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 2 cut(s) 494, 786
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 1 cut(s) 811
ApeKI GCWGC 2 cut(s) 14, 62
ApoI RAATTY 3 cut(s) 35, 261, 426
Asp700I GAANNNNTTC 2 cut(s) 128, 734
Asp718I GGTACC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 355, 517, 756
AvaI CYCGRG 2 cut(s) 494, 786
AvaII GGWCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 720
BbsI GAAGAC 3 cut(s) 201, 645, 843
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 1 cut(s) 74
BccI CCATC 4 cut(s) 267, 316, 697, 887
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 2 cut(s) 347, 533
BfmI CTRYAG 2 cut(s) 15, 459
BfrI CTTAAG 1 cut(s) 835
BisI GCNGC 3 cut(s) 15, 63, 151
BlsI GCNGC 3 cut(s) 16, 64, 152
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 2 cut(s) 494, 786
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 456, 530
BmsI GCATC 2 cut(s) 14, 656
BpiI GAAGAC 3 cut(s) 201, 645, 843
BpuEI CTTGAG 2 cut(s) 71, 724
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 694, 695
BseAI TCCGGA 1 cut(s) 592
BseGI GGATG 6 cut(s) 145, 232, 278, 327, 550, 647
BseLI CCNNNNNNNGG 3 cut(s) 318, 694, 695
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 694
BshFI GGCC 1 cut(s) 813
BshNI GGYRCC 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 720
BsiHKCI CYCGRG 2 cut(s) 494, 786
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 3 cut(s) 318, 694, 695
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 1 cut(s) 813
BsoBI CYCGRG 2 cut(s) 494, 786
Bsp1286I GDGCHC 1 cut(s) 720
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 3 cut(s) 329, 418, 684
BspACI CCGC 4 cut(s) 74, 150, 203, 252
BspANI GGCC 1 cut(s) 813
BspEI TCCGGA 1 cut(s) 592
BspHI TCATGA 2 cut(s) 120, 474
BspLI GGNNCC 2 cut(s) 456, 530
BspMAI CTGCAG 2 cut(s) 19, 463
BspPI GGATC 2 cut(s) 337, 679
BspQI GCTCTTC 2 cut(s) 374, 725
BspT107I GGYRCC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 835
BssMI GATC 3 cut(s) 329, 418, 684
Bst6I CTCTTC 4 cut(s) 374, 444, 628, 725
BstAFI CTTAAG 1 cut(s) 835
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 133, 411
BstF5I GGATG 6 cut(s) 145, 232, 278, 327, 550, 647
BstKTI GATC 3 cut(s) 332, 421, 687
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 3 cut(s) 329, 418, 684
BstMWI GCNNNNNNNGC 4 cut(s) 11, 71, 188, 830
BstSFI CTRYAG 2 cut(s) 15, 459
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 3 cut(s) 201, 645, 843
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 6 cut(s) 145, 232, 278, 327, 550, 647
Cac8I GCNNGC 1 cut(s) 193
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 2 cut(s) 120, 474
Cfr13I GGNCC 1 cut(s) 454
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 529
CviAII CATG 5 cut(s) 121, 475, 619, 674, 727
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 133, 411
DpnI GATC 3 cut(s) 331, 420, 686
DpnII GATC 3 cut(s) 329, 418, 684
DraIII CACNNNGTG 1 cut(s) 873
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
Eam1104I CTCTTC 4 cut(s) 374, 444, 628, 725
EarI CTCTTC 4 cut(s) 374, 444, 628, 725
Ecl136II GAGCTC 1 cut(s) 718
Eco147I AGGCCT 1 cut(s) 813
Eco24I GRGCYC 1 cut(s) 720
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 706
Eco88I CYCGRG 2 cut(s) 494, 786
EcoICRI GAGCTC 1 cut(s) 718
EcoO109I RGGNCCY 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 720
FaeI CATG 5 cut(s) 124, 478, 622, 677, 730
FaqI GGGAC 1 cut(s) 440
FatI CATG 5 cut(s) 120, 474, 618, 673, 726
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 15, 63, 151
FokI GGATG 6 cut(s) 152, 239, 285, 334, 557, 634
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 3 cut(s) 15, 63, 151
FspBI CTAG 2 cut(s) 347, 533
GluI GCNGC 3 cut(s) 15, 63, 151
GsaI CCCAGC 1 cut(s) 698
HaeIII GGCC 1 cut(s) 813
HapII CCGG 1 cut(s) 593
HgaI GACGC 1 cut(s) 380
Hin1II CATG 5 cut(s) 124, 478, 622, 677, 730
HinfI GANTC 3 cut(s) 206, 615, 882
HpaII CCGG 1 cut(s) 593
HphI GGTGA 3 cut(s) 355, 517, 756
Hpy166II GTNNAC 4 cut(s) 508, 679, 764, 886
Hpy188III TCNNGA 6 cut(s) 50, 121, 475, 496, 593, 788
Hpy8I GTNNAC 4 cut(s) 508, 679, 764, 886
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 139, 242, 803
HpyCH4V TGCA 4 cut(s) 17, 353, 461, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 71, 188, 830
HpyF3I CTNAG 2 cut(s) 133, 411
Hsp92II CATG 5 cut(s) 124, 478, 622, 677, 730
Kpn2I TCCGGA 1 cut(s) 592
KpnI GGTACC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 3 cut(s) 329, 418, 684
LguI GCTCTTC 2 cut(s) 374, 725
LmnI GCTCC 2 cut(s) 715, 876
LpnPI CCDG 6 cut(s) 92, 318, 471, 606, 680, 780
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 2 cut(s) 14, 656
MaeI CTAG 2 cut(s) 347, 533
MaeIII GTNAC 1 cut(s) 861
MalI GATC 3 cut(s) 331, 420, 686
MboI GATC 3 cut(s) 329, 418, 684
MboII GAAGA 8 cut(s) 16, 201, 391, 461, 645, 650, 712, 843
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 5 cut(s) 35, 261, 426, 488, 825
MlyI GAGTC 3 cut(s) 215, 624, 891
MnlI CCTC 5 cut(s) 76, 130, 320, 445, 828
MroI TCCGGA 1 cut(s) 592
MroXI GAANNNNTTC 2 cut(s) 128, 734
MseI TTAA 3 cut(s) 102, 266, 836
MslI CAYNNNNRTG 1 cut(s) 225
MspCI CTTAAG 1 cut(s) 835
MspI CCGG 1 cut(s) 593
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 734
MwoI GCNNNNNNNGC 4 cut(s) 11, 71, 188, 830
NdeII GATC 3 cut(s) 329, 418, 684
NlaIII CATG 5 cut(s) 124, 478, 622, 677, 730
NlaIV GGNNCC 2 cut(s) 456, 530
NmuCI GTSAC 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 494
PagI TCATGA 2 cut(s) 120, 474
PceI AGGCCT 1 cut(s) 813
PciSI GCTCTTC 2 cut(s) 374, 725
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 1 cut(s) 734
PdmI GAANNNNTTC 2 cut(s) 128, 734
PkrI GCNGC 3 cut(s) 16, 64, 152
PleI GAGTC 3 cut(s) 214, 623, 890
PpsI GAGTC 3 cut(s) 214, 623, 890
PpuMI RGGWCCY 1 cut(s) 454
Psp124BI GAGCTC 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 694
PspN4I GGNNCC 2 cut(s) 456, 530
PspPI GGNCC 1 cut(s) 454
PspPPI RGGWCCY 1 cut(s) 454
PstI CTGCAG 2 cut(s) 19, 463
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 684
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 720
SapI GCTCTTC 2 cut(s) 374, 725
SaqAI TTAA 3 cut(s) 102, 266, 836
SatI GCNGC 3 cut(s) 15, 63, 151
Sau3AI GATC 3 cut(s) 329, 418, 684
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 3 cut(s) 215, 624, 891
SduI GDGCHC 1 cut(s) 720
SetI ASST 9 cut(s) 456, 482, 530, 534, 584, 720, 769, 787, 820
SfaNI GCATC 2 cut(s) 14, 656
SfcI CTRYAG 2 cut(s) 15, 459
Sfr274I CTCGAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 454
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 4 cut(s) 50, 494, 739, 835
SmoI CTYRAG 4 cut(s) 50, 494, 739, 835
Sse9I AATT 5 cut(s) 35, 261, 426, 488, 825
SseBI AGGCCT 1 cut(s) 813
SsiI CCGC 4 cut(s) 74, 150, 203, 252
SspMI CTAG 2 cut(s) 347, 533
SstI GAGCTC 1 cut(s) 720
StuI AGGCCT 1 cut(s) 813
TaqI TCGA 4 cut(s) 390, 495, 613, 631
TasI AATT 5 cut(s) 35, 261, 426, 488, 825
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 3 cut(s) 102, 266, 836
Tru9I TTAA 3 cut(s) 102, 266, 836
TseFI GTSAC 1 cut(s) 861
TseI GCWGC 2 cut(s) 14, 62
Tsp45I GTSAC 1 cut(s) 861
TspDTI ATGAA 6 cut(s) 16, 137, 246, 296, 576, 743
TspGWI ACGGA 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 835
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 3 cut(s) 35, 261, 426
XhoI CTCGAG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 2 cut(s) 128, 734
XspI CTAG 2 cut(s) 347, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.