Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20976963 .. 20978499

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G202200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTTCAACAGATTATTGAGTTGATAGAGGAGGAGCTGCCAGTGCTCCAAATGTCTCTGGTACTCACAGGGGATGTGAAGGCCGGCCTTGTCCTTGTTGACATTGTTAATGGCTTCTGTACCGTAGGTGCTGGAAATTTCTTTCTGTGCACAAAATGGCCTGTCTTTGCTAGTCTTGATTCTCATCACCTAGACATTCATGAGCCTCCTTATCCTCCTCATTGCATTGCTGGAACTGATGAAGCAAAGCTAGTCCCAGCCCTACAATGGTTGGAGAATGAAGCTAATGTGACACTTAGGCGTAAAGATTGCATCGACGGGTTCCTTGGTTCCGTTGAGAAAGATGGCTCTAATATATTGTTCGTAGGGATATGCATAGATATATGTGTCCTAGATTTTGTGTGTACCACTTTGTCTGCAAGAAATCGAGGTTTTCTTGTCCCTCTAGAGGATGTGATTGTATATTCTCATGGTTGCGCCACTTTTGATATTCCTGCCAACACTTACAAAGATGTTGTAGCTCATCCCCAGGAGTTGATGCATCATATAGGCCTTCATGTAGCCGAAGGAAGAGGAGCAAAGGTAATGTCCCAAGTGTCATTCGATGCAAAAGATTCGGGCGACGTATCCCAAAGTGGTTTGTCATCTACAGATGGTGATAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

223

Amino Acids

24.06

Weight (kDa)

4.64

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	3 cut(s)	63, 121, 406
AfiI	CCNNNNNNNGG	2 cut(s)	267, 448
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	4 cut(s)	37, 250, 284, 521
AluI	AGCT	4 cut(s)	37, 250, 284, 521
Alw21I	GWGCWC	2 cut(s)	48, 152
Alw26I	GTCTC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	148
AoxI	GGCC	4 cut(s)	81, 85, 158, 550
ApaLI	GTGCAC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	136
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AspLEI	GCGC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	179, 668
BaeGI	GKGCMC	1 cut(s)	152
Bbv12I	GWGCWC	2 cut(s)	48, 152
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	338, 647
BcgI	CGANNNNNNTGC	2 cut(s)	597, 631
BciT130I	CCWGG	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	5 cut(s)	171, 191, 251, 392, 446
BfmI	CTRYAG	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	637
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	323, 331
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	4 cut(s)	321, 528, 550, 595
BsaBI	GATNNNNATC	1 cut(s)	183
BsaJI	CCNNGG	2 cut(s)	325, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 448
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	2 cut(s)	220, 225
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	2 cut(s)	325, 528
BseGI	GGATG	3 cut(s)	79, 457, 523
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	267, 448
BseMI	GCAATG	2 cut(s)	220, 225
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	4 cut(s)	44, 47, 207, 588
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	4 cut(s)	83, 87, 160, 552
BsiHKAI	GWGCWC	2 cut(s)	48, 152
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	3 cut(s)	239, 425, 574
BslI	CCNNNNNNNGG	2 cut(s)	267, 448
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	239, 425, 574
BsnI	GGCC	4 cut(s)	83, 87, 160, 552
Bsp1286I	GDGCHC	2 cut(s)	48, 152
BspANI	GGCC	4 cut(s)	83, 87, 160, 552
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	323, 331
BsrDI	GCAATG	2 cut(s)	220, 225
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	325, 528
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	79, 457, 523
BstHHI	GCGC	1 cut(s)	479
BstMAI	GTCTC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	4 cut(s)	83, 87, 160, 552
BtsCI	GGATG	3 cut(s)	79, 457, 523
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	62, 120, 405
CviAII	CATG	3 cut(s)	200, 470, 557
CviQI	GTAC	3 cut(s)	62, 120, 405
DdeI	CTNAG	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	2 cut(s)	377, 543
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	203, 473, 560
FaqI	GGGAC	3 cut(s)	239, 425, 574
FatI	CATG	3 cut(s)	199, 469, 556
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	3 cut(s)	86, 464, 510
FseI	GGCCGGCC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	5 cut(s)	171, 191, 251, 392, 446
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	38
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	83, 87, 160, 552
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	203, 473, 560
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	179, 614
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	179, 668
Hpy166II	GTNNAC	3 cut(s)	100, 150, 405
Hpy188III	TCNNGA	3 cut(s)	176, 200, 446
Hpy8I	GTNNAC	3 cut(s)	100, 150, 405
Hpy99I	CGWCG	2 cut(s)	320, 626
HpyAV	CCTTC	3 cut(s)	73, 560, 563
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	7 cut(s)	150, 225, 312, 375, 419, 541, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	203, 473, 560
HspAI	GCGC	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
LmnI	GCTCC	3 cut(s)	34, 51, 575
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	4 cut(s)	321, 528, 550, 595
MaeI	CTAG	5 cut(s)	171, 191, 251, 392, 446
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	582
MhlI	GDGCHC	2 cut(s)	48, 152
MluCI	AATT	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	22, 25, 216, 225, 228, 422, 442, 453, 566
Mph1103I	ATGCAT	2 cut(s)	377, 543
MroNI	GCCGGC	1 cut(s)	83
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	43
NaeI	GCCGGC	1 cut(s)	85
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	203, 473, 560
NlaIV	GGNNCC	2 cut(s)	323, 331
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	2 cut(s)	377, 543
PagI	TCATGA	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	552
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	179, 614
PkrI	GCNGC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	323, 331
RigI	GGCCGGCC	1 cut(s)	87
RsaI	GTAC	3 cut(s)	63, 121, 406
RsaNI	GTAC	3 cut(s)	62, 120, 405
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	48, 152
SetI	ASST	9 cut(s)	39, 130, 192, 252, 286, 433, 523, 585, 627
SfaNI	GCATC	4 cut(s)	321, 528, 550, 595
SfcI	CTRYAG	1 cut(s)	648
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	552
SspMI	CTAG	5 cut(s)	171, 191, 251, 392, 446
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	315, 427, 603
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	179, 614
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	188, 255, 294, 545
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	48
VneI	GTGCAC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XspI	CTAG	5 cut(s)	171, 191, 251, 392, 446
Zsp2I	ATGCAT	2 cut(s)	377, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.