Prupe.6G204200_v2.0.a1

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
21217100 .. 21218701
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G204200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1602 bp
ATGGATAAGAAGGAGCATTTGGACCGAAAGAACAAACATGTTATTGATTATGACGAAGATGAGAAGAAAAAGCATGTTATTGATGATGATGAATATGAGAAGAAAAAGAAGGTTGATGCTAAGGGAGCCACCTCCATTCTTGAGGGAGTCAGCCTGTCACATATCTATGGAATCAAGCCCCATCACCTCCAAAACGAACTAGTGGAGAAGATACTGCCTCGCCTAGATGTCAAGTCCCTGTTGAGATTTCAGCTTGTATCGAAAGACTGGATGTCCATGATAAGAAAACCTGAGTTGACCATGCAGCACAAGGAGATGAAGCCCAACCCCAATTACCTCTTCCTACTCACTTCAGCCTCAGAGGCCCGGCCCGAAATCTGCTTTACTCGTATTGAGGTCCATCCCTATAGAAAGAGAGCTAAGCAGGAGATTATTCTGAACGTTTCCCATCACATTACCGAACCAGAAATTCCTAATCATAGAGAATATAGCCTGCCGAATGCTTCTGTTACATTTAGATCTCAAGCCGTCAATGGATTAGTGTGTACATTTGGATCGAATGGCCAGGTCTATAAGGTATTTATCCTCAATCCTTACACCAGAATTCTGCTCACCCTGCCAGATGGTCCCCCACAGCGTCCTCACTTGCAGTCCCCCAGCCATTTCCATAATCAAATTGCATTTCATTTTGGGTTTGATCCAAACCGGGAAGAGTACAAGGTATTGCAAGCCCAATGGGCTTTGGAGGGTGCTACTGCTTCGTACAGTGTCTTTCCTGGTGAAGTTCTTGAATTCAAATTGTGCATAATTACCCTTGGCTCCACTGAATGGAGACAAATAGAGCCTCCTCTCTTTCTGACCGCCAACGAAGCTTACGATTTTCTTGACAATACCAACAAGTCTCTATTCGTGCGTAGAAGTGGAAGTATGTATTGGCTGTATTTTCATTCCATTTTGGCATTCGACGTCGGGCTGGAGACCTTTAGTTTAATCCAAGTTCCTCAATCATTTAGCTATCCTTGGTGTATTTCTTCGGAATTTAGTTTGGTTGAGGTTGAAGAGAGCCTAGCTCTAATATGGAAAGACAAGCTTGGCCAGCCAAGGCTTTCGATTCGCAGGCATGACAGTTGGGAGACTAGGGAAGAAGATTTGATTTCCTGTTGGAAATCAAATTTTCATAAAACTCTCTTCCCGATAAGTCCTAGTTTGATAATGGCGACTGAGCACTATCCAAGAAGGATTAGAAAGTTTGTAGGACTGGAGCTTCTAGATGTGCCTACCAAAACAACTCGTATGTATGAGTTAAAAATCAAAGCACCTCTTCGATGTACACCACAGCAATTTGTTGAAGCTCAGAAGCAACGTAAGCATATAGAGGTGCCTTTTCCACATGCATGCTCCATCGTGCATTATGAAGAATCTTTTATGATACCACAAGCAGCAGCAGGACCAGCAACACCAGCAGCACCAGCAGCACCAGCAGCACCACCAGCAGTAGCAGCAGCAGCACCAGCAGGACTAGCAACACCAGCAGCACCATCAGCAGCAGCACCAGCAGGACCAGCAACACCAGCAGCACCACCAGCACCACCAGCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

534

Amino Acids

60.36

Weight (kDa)

7.7

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 969
Acc36I ACCTGC 1 cut(s) 1586
AccB1I GGYRCC 1 cut(s) 1378
AccB7I CCANNNNNTGG 1 cut(s) 828
AciI CCGC 1 cut(s) 861
AclI AACGTT 1 cut(s) 441
AclWI GGATC 2 cut(s) 562, 692
AcoI YGGCCR 2 cut(s) 562, 1093
AcsI RAATTY 5 cut(s) 468, 603, 791, 1037, 1171
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 966
AfaI GTAC 4 cut(s) 547, 716, 764, 1330
AfiI CCNNNNNNNGG 2 cut(s) 828, 1595
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 4 cut(s) 791, 796, 1058, 1349
AhdI GACNNNNNGTC 1 cut(s) 271
AhlI ACTAGT 1 cut(s) 199
AjnI CCWGG 2 cut(s) 564, 775
AjuI GAANNNNNNNTTGG 5 cut(s) 34, 323, 355, 916, 948
AluBI AGCT 8 cut(s) 253, 419, 872, 1014, 1070, 1090, 1264, 1352
AluI AGCT 8 cut(s) 253, 419, 872, 1014, 1070, 1090, 1264, 1352
Alw21I GWGCWC 1 cut(s) 1227
Alw26I GTCTC 4 cut(s) 826, 906, 971, 1127
AlwI GGATC 2 cut(s) 562, 692
AoxI GGCC 4 cut(s) 363, 368, 562, 1093
ApoI RAATTY 5 cut(s) 468, 603, 791, 1037, 1171
AspS9I GGNCC 7 cut(s) 22, 364, 369, 397, 626, 1448, 1559
AsuC2I CCSGG 2 cut(s) 367, 707
AsuHPI GGTGA 3 cut(s) 176, 604, 791
AvaII GGWCC 5 cut(s) 22, 397, 626, 1448, 1559
BalI TGGCCA 2 cut(s) 564, 1095
BanI GGYRCC 1 cut(s) 1378
Bbv12I GWGCWC 1 cut(s) 1227
BccI CCATC 6 cut(s) 189, 408, 456, 617, 1409, 1546
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 566, 777
BcnI CCSGG 2 cut(s) 367, 707
BcoDI GTCTC 4 cut(s) 826, 906, 971, 1127
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 7 cut(s) 200, 224, 1067, 1137, 1203, 1268, 1520
BfmI CTRYAG 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 1586
BglI GCCNNNNNGGC 2 cut(s) 362, 737
BglII AGATCT 1 cut(s) 518
BlpI GCTNAGC 1 cut(s) 420
Bme1390I CCNGG 4 cut(s) 367, 566, 707, 777
Bme18I GGWCC 5 cut(s) 22, 397, 626, 1448, 1559
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 7 cut(s) 22, 364, 369, 397, 626, 1448, 1559
BmiI GGNNCC 4 cut(s) 127, 628, 820, 1380
BmrFI CCNGG 4 cut(s) 367, 566, 707, 777
BmsI GCATC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 1054, 1086
BpmI CTGGAG 2 cut(s) 995, 1280
Bpu10I CCTNAGC 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 420
BpuEI CTTGAG 2 cut(s) 161, 507
BpuMI CCSGG 2 cut(s) 367, 707
BsaHI GRCGYC 1 cut(s) 966
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 3 cut(s) 814, 1019, 1100
Bsc4I CCNNNNNNNGG 2 cut(s) 828, 1595
Bse1I ACTGG 2 cut(s) 272, 1263
BseBI CCWGG 2 cut(s) 566, 777
BseDI CCNNGG 3 cut(s) 814, 1019, 1100
BseGI GGATG 2 cut(s) 276, 400
BseLI CCNNNNNNNGG 2 cut(s) 828, 1595
BseMII CTCAG 4 cut(s) 282, 372, 1212, 1367
BseNI ACTGG 2 cut(s) 272, 1263
BseRI GAGGAG 1 cut(s) 837
BseYI CCCAGC 1 cut(s) 656
BshFI GGCC 4 cut(s) 365, 370, 564, 1095
BshNI GGYRCC 1 cut(s) 1378
BsiHKAI GWGCWC 1 cut(s) 1227
BsiSI CCGG 2 cut(s) 367, 706
BslFI GGGAC 3 cut(s) 220, 612, 637
BslI CCNNNNNNNGG 2 cut(s) 828, 1595
BsmAI GTCTC 4 cut(s) 826, 906, 971, 1127
BsmFI GGGAC 3 cut(s) 220, 612, 637
BsmI GAATGC 2 cut(s) 505, 959
BsnI GGCC 4 cut(s) 365, 370, 564, 1095
Bso31I GGTCTC 1 cut(s) 971
Bsp1286I GDGCHC 1 cut(s) 1227
Bsp1407I TGTACA 2 cut(s) 545, 1328
Bsp143I GATC 3 cut(s) 518, 554, 697
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 1 cut(s) 861
BspANI GGCC 4 cut(s) 365, 370, 564, 1095
BspCNI CTCAG 4 cut(s) 283, 371, 1213, 1366
BspLI GGNNCC 4 cut(s) 127, 628, 820, 1380
BspMI ACCTGC 1 cut(s) 1586
BspPI GGATC 2 cut(s) 562, 692
BspT107I GGYRCC 1 cut(s) 1378
BspTNI GGTCTC 1 cut(s) 971
BsrGI TGTACA 2 cut(s) 545, 1328
BsrI ACTGG 2 cut(s) 272, 1263
BssECI CCNNGG 3 cut(s) 814, 1019, 1100
BssMI GATC 3 cut(s) 518, 554, 697
BssNI GRCGYC 1 cut(s) 966
BssT1I CCWWGG 3 cut(s) 814, 1019, 1100
Bst2UI CCWGG 2 cut(s) 566, 777
Bst4CI ACNGT 2 cut(s) 767, 1127
Bst6I CTCTTC 5 cut(s) 344, 705, 1053, 1193, 1326
BstACI GRCGYC 1 cut(s) 966
BstAUI TGTACA 2 cut(s) 545, 1328
BstC8I GCNNGC 5 cut(s) 494, 729, 1097, 1118, 1396
BstDEI CTNAG 6 cut(s) 120, 291, 358, 420, 1221, 1353
BstF5I GGATG 2 cut(s) 276, 400
BstKTI GATC 3 cut(s) 521, 557, 700
BstMAI GTCTC 4 cut(s) 826, 906, 971, 1127
BstMBI GATC 3 cut(s) 518, 554, 697
BstNI CCWGG 2 cut(s) 566, 777
BstNSI RCATGY 4 cut(s) 41, 77, 1394, 1398
BstSCI CCNGG 4 cut(s) 365, 564, 705, 775
BstSFI CTRYAG 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 4 cut(s) 365, 370, 564, 1095
BtsCI GGATG 2 cut(s) 276, 400
BtsIMutI CAGTG 2 cut(s) 772, 822
BveI ACCTGC 1 cut(s) 1586
Cac8I GCNNGC 5 cut(s) 494, 729, 1097, 1118, 1396
Cfr13I GGNCC 7 cut(s) 22, 364, 369, 397, 626, 1448, 1559
CseI GACGC 1 cut(s) 626
Csp6I GTAC 4 cut(s) 546, 715, 763, 1329
CviAII CATG 7 cut(s) 38, 74, 277, 301, 1121, 1391, 1395
CviQI GTAC 4 cut(s) 546, 715, 763, 1329
DdeI CTNAG 6 cut(s) 120, 291, 358, 420, 1221, 1353
DpnI GATC 3 cut(s) 520, 556, 699
DpnII GATC 3 cut(s) 518, 554, 697
DriI GACNNNNNGTC 1 cut(s) 271
EaeI YGGCCR 2 cut(s) 562, 1093
Eam1104I CTCTTC 5 cut(s) 344, 705, 1053, 1193, 1326
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 5 cut(s) 344, 705, 1053, 1193, 1326
Eco130I CCWWGG 3 cut(s) 814, 1019, 1100
Eco31I GGTCTC 1 cut(s) 971
Eco47I GGWCC 5 cut(s) 22, 397, 626, 1448, 1559
Eco57I CTGAAG 1 cut(s) 336
EcoRI GAATTC 2 cut(s) 603, 791
EcoRII CCWGG 2 cut(s) 564, 775
EcoT14I CCWWGG 3 cut(s) 814, 1019, 1100
EcoT22I ATGCAT 1 cut(s) 1396
ErhI CCWWGG 3 cut(s) 814, 1019, 1100
FaeI CATG 7 cut(s) 41, 77, 280, 304, 1124, 1394, 1398
FalI AAGNNNNNCTT 4 cut(s) 1074, 1106, 1305, 1337
FaqI GGGAC 3 cut(s) 220, 612, 637
FatI CATG 7 cut(s) 37, 73, 276, 300, 1120, 1390, 1394
FokI GGATG 2 cut(s) 283, 387
FspBI CTAG 7 cut(s) 200, 224, 1067, 1137, 1203, 1268, 1520
GsaI CCCAGC 1 cut(s) 660
GsuI CTGGAG 2 cut(s) 995, 1280
HaeIII GGCC 4 cut(s) 365, 370, 564, 1095
HapII CCGG 2 cut(s) 367, 706
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 966
Hin1II CATG 7 cut(s) 41, 77, 280, 304, 1124, 1394, 1398
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 2 cut(s) 870, 1088
HinfI GANTC 4 cut(s) 147, 171, 1111, 1418
HpaII CCGG 2 cut(s) 367, 706
HphI GGTGA 3 cut(s) 176, 604, 791
Hpy166II GTNNAC 3 cut(s) 297, 546, 1331
Hpy188I TCNGA 5 cut(s) 361, 438, 858, 1036, 1356
Hpy188III TCNNGA 5 cut(s) 140, 788, 884, 1192, 1268
Hpy8I GTNNAC 3 cut(s) 297, 546, 1331
Hpy99I CGWCG 2 cut(s) 968, 971
HpyAV CCTTC 3 cut(s) 4, 103, 1230
HpyCH4III ACNGT 2 cut(s) 767, 1127
HpyCH4IV ACGT 3 cut(s) 441, 966, 1363
HpyCH4V TGCA 7 cut(s) 304, 649, 680, 727, 804, 1394, 1408
HpyF3I CTNAG 6 cut(s) 120, 291, 358, 420, 1221, 1353
HpySE526I ACGT 3 cut(s) 441, 966, 1363
Hsp92I GRCGYC 1 cut(s) 966
Hsp92II CATG 7 cut(s) 41, 77, 280, 304, 1124, 1394, 1398
Kzo9I GATC 3 cut(s) 518, 554, 697
LmnI GCTCC 5 cut(s) 13, 125, 824, 1261, 1403
LweI GCATC 1 cut(s) 106
MaeI CTAG 7 cut(s) 200, 224, 1067, 1137, 1203, 1268, 1520
MaeII ACGT 3 cut(s) 441, 966, 1363
MaeIII GTNAC 2 cut(s) 156, 508
MalI GATC 3 cut(s) 520, 556, 699
MboI GATC 3 cut(s) 518, 554, 697
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 1227
MlsI TGGCCA 2 cut(s) 564, 1095
MluNI TGGCCA 2 cut(s) 564, 1095
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 1142
Mox20I TGGCCA 2 cut(s) 564, 1095
Mph1103I ATGCAT 1 cut(s) 1396
MscI TGGCCA 2 cut(s) 564, 1095
MseI TTAA 3 cut(s) 989, 1304, 1600
MslI CAYNNNNRTG 2 cut(s) 165, 1393
Msp20I TGGCCA 2 cut(s) 564, 1095
MspI CCGG 2 cut(s) 367, 706
MspR9I CCNGG 4 cut(s) 367, 566, 707, 777
Mva1269I GAATGC 2 cut(s) 505, 959
MvaI CCWGG 2 cut(s) 566, 777
NciI CCSGG 2 cut(s) 367, 707
NdeII GATC 3 cut(s) 518, 554, 697
NlaIII CATG 7 cut(s) 41, 77, 280, 304, 1124, 1394, 1398
NlaIV GGNNCC 4 cut(s) 127, 628, 820, 1380
NmuCI GTSAC 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 1396
NspI RCATGY 4 cut(s) 41, 77, 1394, 1398
PaeI GCATGC 1 cut(s) 1398
PciI ACATGT 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PctI GAATGC 2 cut(s) 505, 959
PfeI GAWTC 3 cut(s) 171, 1111, 1418
PflMI CCANNNNNTGG 1 cut(s) 828
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PscI ACATGT 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 564, 775
PspFI CCCAGC 1 cut(s) 656
PspGI CCWGG 2 cut(s) 564, 775
PspN4I GGNNCC 4 cut(s) 127, 628, 820, 1380
PspPI GGNCC 7 cut(s) 22, 364, 369, 397, 626, 1448, 1559
PsuI RGATCY 1 cut(s) 518
RsaI GTAC 4 cut(s) 547, 716, 764, 1330
RsaNI GTAC 4 cut(s) 546, 715, 763, 1329
RseI CAYNNNNRTG 2 cut(s) 165, 1393
SaqAI TTAA 3 cut(s) 989, 1304, 1600
Sau3AI GATC 3 cut(s) 518, 554, 697
Sau96I GGNCC 7 cut(s) 22, 364, 369, 397, 626, 1448, 1559
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 4 cut(s) 367, 566, 707, 777
SduI GDGCHC 1 cut(s) 1227
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 406
SinI GGWCC 5 cut(s) 22, 397, 626, 1448, 1559
SmiMI CAYNNNNRTG 2 cut(s) 165, 1393
SmlI CTYRAG 2 cut(s) 140, 522
SmoI CTYRAG 2 cut(s) 140, 522
SpeI ACTAGT 1 cut(s) 199
SphI GCATGC 1 cut(s) 1398
SsiI CCGC 1 cut(s) 861
SspMI CTAG 7 cut(s) 200, 224, 1067, 1137, 1203, 1268, 1520
StyD4I CCNGG 4 cut(s) 365, 564, 705, 775
StyI CCWWGG 3 cut(s) 814, 1019, 1100
TaaI ACNGT 2 cut(s) 767, 1127
TaiI ACGT 3 cut(s) 444, 969, 1366
TaqI TCGA 5 cut(s) 260, 557, 963, 1109, 1324
TaqII GACCGA 1 cut(s) 39
TatI WGTACW 3 cut(s) 545, 714, 1328
TfiI GAWTC 3 cut(s) 171, 1111, 1418
Tru1I TTAA 3 cut(s) 989, 1304, 1600
Tru9I TTAA 3 cut(s) 989, 1304, 1600
TscAI CASTG 2 cut(s) 772, 829
TseFI GTSAC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 156
TspDTI ATGAA 6 cut(s) 105, 332, 674, 935, 1166, 1428
TspRI CASTG 2 cut(s) 772, 829
Van91I CCANNNNNTGG 1 cut(s) 828
VpaK11BI GGWCC 5 cut(s) 22, 397, 626, 1448, 1559
XapI RAATTY 5 cut(s) 468, 603, 791, 1037, 1171
XbaI TCTAGA 1 cut(s) 1267
XceI RCATGY 4 cut(s) 41, 77, 1394, 1398
XspI CTAG 7 cut(s) 200, 224, 1067, 1137, 1203, 1268, 1520
ZraI GACGTC 1 cut(s) 967
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.