Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21277274 .. 21279336

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G204600.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGACTGTACCCAGACTAAGCTACCTTAACCACCTCAAGTACTTGACATCTACTGCTCAAAGCTGCTTTGACGCCTCCTTCAAGAACACAAGTCTCACAGAGGCCTCTCAGTTTTATTCTTCTCTGATTCAACAATGCAATAAGCTTATTGATCCGAGTTTAAAGTGTGGTAGCATTAACTATGGCCGCAAACTGTTTGATGAGTTGCCTAACAGGCATGTATTCATGTGGAATTCGATGATCTCTTCTTATATTAGCCATAAGAAGAGCAAGGAAGGAATTGGGTTGTATGAGAGGATGGTCTTAGATGGAGTGTACCTCGATGAATACACGTTTTCGTGTGTTTTCAAGGCTTTCTCTAACCTGGGACTTATAAATGAAGGGCGGAGAGGTCATGGGTTGTCAGTGGTTTTGGGTCTAGAGGTTTCAAATGCGTTTGTTCGTAGTGGCCTTGTTGATATGTATGCTAAGTTTGGTAGAATGAAGGATGCCCGGCTGCTGTCGAACCGTGCTGTGGACAAGGATGTTGTTTTGTTTATGTCGTTAATTGTGGGTTACTCTCAGCATGGTGATGATGATTTAACTAATGGTAAATTGGTCCATGGTCTTGTTATCAAGTCTGGTTATGAACCCGCTGTGGCTTCACAGACTTCACTCCTAACTATGTATGCTAGGTGTGGGTTGATTGGTGATTCTCTAAGGATTTTCAAAAGATTTCCAAATCCAAACCACGTAACTTGGACATCTCTTATTGTGGGACTTGTACGAAACGGCAGAGAAGAATTAGCTTTGACAAAGTTCAGAATAATGATCCGCAACTCAATAATTCCGAATTGTTTAACGTTGTCTAGAAAACAAATCCATACCATGGTGACAAAATTTGGATTGGATAGAGACATATATGCCGGTGCTGCTCTCGTGAACTTGTATGGGAAATGCGGAAGTACAGAGATGGCAAGTTACGCCCAGAATGGATTTGGGCATGAAGCACCTGAACTTTTTAATAGTATGAAAGAATTGGGACTTGAACCAAATGAAGTAACAATTTTGAGTGTTCTCTTGGCATGCAACAATTCGGGATTAGTTCATGAAGGATGCCAAATCTTTGCTACTATTACGAATAATCAAACTACCGAACTTGAAGAGGCTGAAGCGCTAGTAAAACAAGTCGGAAATCCAGATGTAGTCTTATGGAGGACACTGCTAAGTGCATGTAAGCTTCATGGAGAGGTAGAGATGGCAGAAAGAGCTGTAAATAAATTCAAGAAGAATCCTGCAATGAGTTGGGTTGACGTGGATAGGGAGGTCCACACTTTCATGGCTGGAGATTTGTCCCATCCAAGATCTAGAGAGATCAATGAAACTTTAGAAAAATTGATTGGAAAAGTAAAACTATTGGGTTATGTTCCTGATACAAGATTTGTGTTGCAGGATATGGATGAGGAGCTAAAGAAGAGGTCTTTGTACTATCACAGCGAGAAGCTAGCCATTTCGTTTGCTCTGTTGATGAGTAGTAATAAAAATACCATTATCAGGATATTTAAGAACCTTAGAGTTTGTGGGGACTGTCATTCCTGGATAAAATTTGTAACCAAAGTTAGTGGTAGAGAAATAATTGCTCGGGATGCCAAGAGATTCCATCATTTTAAGGATGGACTTTGTTCCTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

561

Amino Acids

63.08

Weight (kDa)

8.82

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	868
AciI	CCGC	5 cut(s)	187, 385, 633, 814, 939
AclI	AACGTT	1 cut(s)	842
AclWI	GGATC	2 cut(s)	146, 805
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	4 cut(s)	232, 878, 1259, 1583
AcuI	CTGAAG	1 cut(s)	1170
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	6 cut(s)	9, 41, 317, 765, 946, 1466
AfeI	AGCGCT	1 cut(s)	1155
AfiI	CCNNNNNNNGG	3 cut(s)	514, 868, 1533
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	82, 131, 349, 429, 709, 1028, 1142, 1264
AjiI	CACGTC	1 cut(s)	1294
AjnI	CCWGG	2 cut(s)	363, 1574
AjuI	GAANNNNNNNTTGG	2 cut(s)	1362, 1394
AluBI	AGCT	8 cut(s)	21, 63, 145, 788, 1219, 1250, 1447, 1483
AluI	AGCT	8 cut(s)	21, 63, 145, 788, 1219, 1250, 1447, 1483
Alw26I	GTCTC	3 cut(s)	98, 888, 1665
AlwI	GGATC	2 cut(s)	146, 805
Ama87I	CYCGRG	1 cut(s)	1620
Aor51HI	AGCGCT	1 cut(s)	1155
AoxI	GGCC	3 cut(s)	102, 184, 448
ApeKI	GCWGC	3 cut(s)	63, 496, 911
ApoI	RAATTY	4 cut(s)	232, 878, 1259, 1583
AspLEI	GCGC	1 cut(s)	1156
AspS9I	GGNCC	2 cut(s)	598, 1306
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	3 cut(s)	581, 701, 883
AsuNHI	GCTAGC	1 cut(s)	1483
AvaI	CYCGRG	1 cut(s)	1620
AvaII	GGWCC	2 cut(s)	598, 1306
BauI	CACGAG	1 cut(s)	917
BbvI	GCAGC	3 cut(s)	50, 483, 898
BccI	CCATC	7 cut(s)	292, 302, 946, 1231, 1344, 1646, 1647
BceAI	ACGGC	1 cut(s)	787
BciT130I	CCWGG	2 cut(s)	365, 1576
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	98, 888, 1665
BfaI	CTAG	6 cut(s)	419, 672, 849, 1157, 1347, 1484
BfoI	RGCGCY	1 cut(s)	1157
BglI	GCCNNNNNGGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	1343
BisI	GCNGC	4 cut(s)	64, 187, 497, 912
BlsI	GCNGC	4 cut(s)	65, 188, 498, 913
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	365, 493, 1576
Bme18I	GGWCC	2 cut(s)	598, 1306
BmeT110I	CYCGRG	1 cut(s)	1620
BmgBI	CACGTC	1 cut(s)	1294
BmgT120I	GGNCC	2 cut(s)	598, 1306
BmrFI	CCNGG	3 cut(s)	365, 493, 1576
BmsI	GCATC	3 cut(s)	478, 1085, 1615
BmtI	GCTAGC	1 cut(s)	1487
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpmI	CTGGAG	1 cut(s)	1344
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	364, 601, 867
Bsc4I	CCNNNNNNNGG	3 cut(s)	514, 868, 1533
Bse118I	RCCGGY	1 cut(s)	905
Bse3DI	GCAATG	1 cut(s)	1284
BseBI	CCWGG	2 cut(s)	365, 1576
BseDI	CCNNGG	3 cut(s)	364, 601, 867
BseGI	GGATG	8 cut(s)	303, 493, 529, 1100, 1336, 1444, 1630, 1657
BseLI	CCNNNNNNNGG	3 cut(s)	514, 868, 1533
BseMI	GCAATG	1 cut(s)	1284
BseMII	CTCAG	2 cut(s)	122, 575
BseRI	GAGGAG	1 cut(s)	1457
BseXI	GCAGC	3 cut(s)	50, 483, 898
BshFI	GGCC	3 cut(s)	104, 186, 450
BsiHKCI	CYCGRG	1 cut(s)	1620
BsiSI	CCGG	2 cut(s)	493, 906
BslFI	GGGAC	5 cut(s)	381, 771, 1035, 1318, 1577
BslI	CCNNNNNNNGG	3 cut(s)	514, 868, 1533
BsmAI	GTCTC	3 cut(s)	98, 888, 1665
BsmFI	GGGAC	5 cut(s)	381, 771, 1035, 1318, 1577
BsnI	GGCC	3 cut(s)	104, 186, 450
BsoBI	CYCGRG	1 cut(s)	1620
Bsp143I	GATC	5 cut(s)	151, 240, 810, 1343, 1353
Bsp19I	CCATGG	2 cut(s)	601, 867
BspACI	CCGC	5 cut(s)	187, 385, 633, 814, 939
BspANI	GGCC	3 cut(s)	104, 186, 450
BspCNI	CTCAG	2 cut(s)	121, 574
BspHI	TCATGA	1 cut(s)	1087
BspOI	GCTAGC	1 cut(s)	1487
BspPI	GGATC	2 cut(s)	146, 805
BspQI	GCTCTTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	1284
BsrFI	RCCGGY	1 cut(s)	905
BssAI	RCCGGY	1 cut(s)	905
BssECI	CCNNGG	3 cut(s)	364, 601, 867
BssMI	GATC	5 cut(s)	151, 240, 810, 1343, 1353
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	917
BssT1I	CCWWGG	2 cut(s)	601, 867
Bst2BI	CACGAG	1 cut(s)	917
Bst2UI	CCWGG	2 cut(s)	365, 1576
Bst4CI	ACNGT	4 cut(s)	7, 195, 509, 1568
Bst6I	CTCTTC	4 cut(s)	250, 260, 1137, 1448
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	1066, 1485
BstDEI	CTNAG	8 cut(s)	17, 108, 304, 468, 561, 698, 1205, 1550
BstDSI	CCRYGG	2 cut(s)	601, 867
BstF5I	GGATG	8 cut(s)	303, 493, 529, 1100, 1336, 1444, 1630, 1657
BstH2I	RGCGCY	1 cut(s)	1157
BstHHI	GCGC	1 cut(s)	1156
BstKTI	GATC	5 cut(s)	154, 243, 813, 1346, 1356
BstMAI	GTCTC	3 cut(s)	98, 888, 1665
BstMBI	GATC	5 cut(s)	151, 240, 810, 1343, 1353
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 911, 962, 1247, 1625
BstNI	CCWGG	2 cut(s)	365, 1576
BstNSI	RCATGY	3 cut(s)	221, 1068, 1215
BstSCI	CCNGG	3 cut(s)	363, 491, 1574
BstV1I	GCAGC	3 cut(s)	50, 483, 898
BstX2I	RGATCY	1 cut(s)	1343
BstYI	RGATCY	1 cut(s)	1343
BsuRI	GGCC	3 cut(s)	104, 186, 450
BtgI	CCRYGG	2 cut(s)	601, 867
BtrI	CACGTC	1 cut(s)	1294
BtsCI	GGATG	8 cut(s)	303, 493, 529, 1100, 1336, 1444, 1630, 1657
BtsI	GCAGTG	1 cut(s)	1199
BtsIMutI	CAGTG	2 cut(s)	411, 1199
Cac8I	GCNNGC	2 cut(s)	1066, 1485
CciI	TCATGA	1 cut(s)	1087
CfoI	GCGC	1 cut(s)	1156
Cfr10I	RCCGGY	1 cut(s)	905
Cfr13I	GGNCC	2 cut(s)	598, 1306
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	6 cut(s)	8, 40, 316, 764, 945, 1465
CspCI	CAANNNNNGTGG	4 cut(s)	719, 754, 1582, 1617
CviQI	GTAC	6 cut(s)	8, 40, 316, 764, 945, 1465
DdeI	CTNAG	8 cut(s)	17, 108, 304, 468, 561, 698, 1205, 1550
DpnI	GATC	5 cut(s)	153, 242, 812, 1345, 1355
DpnII	GATC	5 cut(s)	151, 240, 810, 1343, 1353
DraI	TTTAAA	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	4 cut(s)	250, 260, 1137, 1448
EarI	CTCTTC	4 cut(s)	250, 260, 1137, 1448
EciI	GGCGGA	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	601, 867
Eco147I	AGGCCT	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	598, 1306
Eco47III	AGCGCT	1 cut(s)	1155
Eco57I	CTGAAG	1 cut(s)	1170
Eco88I	CYCGRG	1 cut(s)	1620
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	363, 1574
EcoT14I	CCWWGG	2 cut(s)	601, 867
ErhI	CCWWGG	2 cut(s)	601, 867
FaqI	GGGAC	5 cut(s)	381, 771, 1035, 1318, 1577
FauI	CCCGC	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	64, 187, 497, 912
FokI	GGATG	8 cut(s)	310, 500, 536, 1107, 1323, 1451, 1637, 1664
Fsp4HI	GCNGC	4 cut(s)	64, 187, 497, 912
FspBI	CTAG	6 cut(s)	419, 672, 849, 1157, 1347, 1484
GlaI	GCGC	1 cut(s)	1155
GluI	GCNGC	4 cut(s)	64, 187, 497, 912
GsuI	CTGGAG	1 cut(s)	1344
HaeII	RGCGCY	1 cut(s)	1157
HaeIII	GGCC	3 cut(s)	104, 186, 450
HapII	CCGG	2 cut(s)	493, 906
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	1156
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	1154
HinP1I	GCGC	1 cut(s)	1154
HincII	GTYRAC	1 cut(s)	1291
HindII	GTYRAC	1 cut(s)	1291
HindIII	AAGCTT	2 cut(s)	143, 1217
HinfI	GANTC	4 cut(s)	127, 692, 1270, 1635
HpaII	CCGG	2 cut(s)	493, 906
HphI	GGTGA	3 cut(s)	581, 701, 883
Hpy166II	GTNNAC	5 cut(s)	316, 517, 922, 1291, 1309
Hpy188I	TCNGA	5 cut(s)	126, 156, 803, 831, 1172
Hpy8I	GTNNAC	5 cut(s)	316, 517, 922, 1291, 1309
HpyAV	CCTTC	5 cut(s)	88, 269, 374, 478, 1085
HpyCH4III	ACNGT	4 cut(s)	7, 195, 509, 1568
HpyCH4IV	ACGT	4 cut(s)	332, 732, 842, 1293
HpyCH4V	TGCA	5 cut(s)	138, 1068, 1211, 1277, 1429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 911, 962, 1247, 1625
HpyF3I	CTNAG	8 cut(s)	17, 108, 304, 468, 561, 698, 1205, 1550
HpySE526I	ACGT	4 cut(s)	332, 732, 842, 1293
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	1 cut(s)	1154
Kzo9I	GATC	5 cut(s)	151, 240, 810, 1343, 1353
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	1444
Lsp1109I	GCAGC	3 cut(s)	50, 483, 898
LweI	GCATC	3 cut(s)	478, 1085, 1615
MaeI	CTAG	6 cut(s)	419, 672, 849, 1157, 1347, 1484
MaeII	ACGT	4 cut(s)	332, 732, 842, 1293
MaeIII	GTNAC	6 cut(s)	554, 733, 871, 959, 1039, 1588
MalI	GATC	5 cut(s)	153, 242, 812, 1345, 1355
MboI	GATC	5 cut(s)	151, 240, 810, 1343, 1353
MboII	GAAGA	7 cut(s)	111, 237, 277, 791, 1154, 1279, 1465
MflI	RGATCY	1 cut(s)	1343
MmeI	TCCRAC	1 cut(s)	1150
MseI	TTAA	9 cut(s)	27, 161, 177, 545, 581, 839, 1002, 1542, 1647
MslI	CAYNNNNRTG	2 cut(s)	570, 1316
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	2 cut(s)	493, 906
MspR9I	CCNGG	3 cut(s)	365, 493, 1576
MvaI	CCWGG	2 cut(s)	365, 1576
MwoI	GCNNNNNNNGC	5 cut(s)	214, 911, 962, 1247, 1625
NciI	CCSGG	1 cut(s)	493
NcoI	CCATGG	2 cut(s)	601, 867
NdeII	GATC	5 cut(s)	151, 240, 810, 1343, 1353
NheI	GCTAGC	1 cut(s)	1483
NmuCI	GTSAC	1 cut(s)	871
NspI	RCATGY	3 cut(s)	221, 1068, 1215
PaeI	GCATGC	1 cut(s)	1068
PagI	TCATGA	1 cut(s)	1087
PceI	AGGCCT	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	4 cut(s)	127, 692, 1270, 1635
PflMI	CCANNNNNTGG	1 cut(s)	868
PfoI	TCCNGGA	1 cut(s)	1574
PkrI	GCNGC	4 cut(s)	65, 188, 498, 913
Ppu21I	YACGTR	1 cut(s)	733
PsiI	TTATAA	1 cut(s)	374
Psp1406I	AACGTT	1 cut(s)	842
Psp6I	CCWGG	2 cut(s)	363, 1574
PspGI	CCWGG	2 cut(s)	363, 1574
PspPI	GGNCC	2 cut(s)	598, 1306
PsuI	RGATCY	1 cut(s)	1343
RsaI	GTAC	6 cut(s)	9, 41, 317, 765, 946, 1466
RsaNI	GTAC	6 cut(s)	8, 40, 316, 764, 945, 1465
RseI	CAYNNNNRTG	2 cut(s)	570, 1316
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	9 cut(s)	27, 161, 177, 545, 581, 839, 1002, 1542, 1647
SatI	GCNGC	4 cut(s)	64, 187, 497, 912
Sau3AI	GATC	5 cut(s)	151, 240, 810, 1343, 1353
Sau96I	GGNCC	2 cut(s)	598, 1306
ScaI	AGTACT	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	365, 493, 1576
SfaNI	GCATC	3 cut(s)	478, 1085, 1615
SinI	GGWCC	2 cut(s)	598, 1306
SmiMI	CAYNNNNRTG	2 cut(s)	570, 1316
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	1068
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	5 cut(s)	187, 385, 633, 814, 939
SspMI	CTAG	6 cut(s)	419, 672, 849, 1157, 1347, 1484
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	363, 491, 1574
StyI	CCWWGG	2 cut(s)	601, 867
TaaI	ACNGT	4 cut(s)	7, 195, 509, 1568
TaiI	ACGT	4 cut(s)	335, 735, 845, 1296
TaqI	TCGA	3 cut(s)	236, 321, 503
TatI	WGTACW	3 cut(s)	39, 944, 1464
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	4 cut(s)	127, 692, 1270, 1635
Tru1I	TTAA	9 cut(s)	27, 161, 177, 545, 581, 839, 1002, 1542, 1647
Tru9I	TTAA	9 cut(s)	27, 161, 177, 545, 581, 839, 1002, 1542, 1647
TscAI	CASTG	2 cut(s)	411, 1206
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	3 cut(s)	63, 496, 911
Tsp45I	GTSAC	1 cut(s)	871
TspRI	CASTG	2 cut(s)	411, 1206
Van91I	CCANNNNNTGG	1 cut(s)	868
VpaK11BI	GGWCC	2 cut(s)	598, 1306
XapI	RAATTY	4 cut(s)	232, 878, 1259, 1583
XbaI	TCTAGA	3 cut(s)	418, 848, 1346
XceI	RCATGY	3 cut(s)	221, 1068, 1215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	974
XspI	CTAG	6 cut(s)	419, 672, 849, 1157, 1347, 1484
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.