Prupe.6G206200_v2.0.a1

Dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
21467623 .. 21468050
428 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G206200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 375 bp
ATGGTTGTCGAAGAGAGCTATGCAATCCTAATCCCAAATGGTTTGGCATTAGCTGGTACTACCCCATTGTTGTGTGCCGGGATCACCGCATACAGCCCCCTGAAATATTTTGGACTCTCAAAGCTTGACAGACACTTGGGCGTGCCCGAGTTTGGTGGCGTTGGTCACATGGCTGTGAAGTTTGCCAAAGCTTTTGGAGCGAAGGTCACTGTGATAAGTTCCTCTCCAAGTAAGAAGAAAGAAGCAGTGGAAAGGCTTGGTGCTGATTCTTTTTTGGTCAGTCATAATCAGGAGCAACTAGAGTCACGTGGTATAAACACAATACAAGCTATAACCACAACTAATTTTTCTAATCATGAAGACGTTGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

125

Amino Acids

13.19

Weight (kDa)

6.9

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 89
AcvI CACGTG 1 cut(s) 308
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 152
AluBI AGCT 5 cut(s) 18, 53, 124, 191, 329
AluI AGCT 5 cut(s) 18, 53, 124, 191, 329
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 147
BbrPI CACGTG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 366
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 1 cut(s) 87
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 1 cut(s) 89
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 207, 252
Cac8I GCNNGC 1 cut(s) 143
CciI TCATGA 1 cut(s) 355
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 169, 356
CviJI RGCY 8 cut(s) 18, 53, 96, 124, 173, 191, 256, 329
CviKI_1 RGCY 8 cut(s) 18, 53, 96, 124, 173, 191, 256, 329
CviQI GTAC 1 cut(s) 57
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco72I CACGTG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 146
FaeI CATG 2 cut(s) 172, 359
FaiI YATR 8 cut(s) 21, 91, 170, 285, 314, 332, 357, 373
FatI CATG 2 cut(s) 168, 355
FspBI CTAG 1 cut(s) 299
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 172, 359
HindIII AAGCTT 2 cut(s) 122, 189
HinfI GANTC 3 cut(s) 114, 266, 302
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 290, 356
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 307, 363
HpyCH4V TGCA 2 cut(s) 23, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 2 cut(s) 307, 363
Hsp92II CATG 2 cut(s) 172, 359
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 197, 292
LpnPI CCDG 4 cut(s) 39, 91, 113, 275
MaeI CTAG 1 cut(s) 299
MaeII ACGT 2 cut(s) 307, 363
MaeIII GTNAC 3 cut(s) 164, 205, 303
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 3 cut(s) 23, 247, 371
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 343
MlyI GAGTC 2 cut(s) 108, 311
MnlI CCTC 1 cut(s) 232
MslI CAYNNNNRTG 2 cut(s) 70, 173
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 79
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 172, 359
NmuCI GTSAC 3 cut(s) 164, 205, 303
PagI TCATGA 1 cut(s) 355
PfeI GAWTC 1 cut(s) 266
PleI GAGTC 2 cut(s) 108, 310
PmaCI CACGTG 1 cut(s) 308
PmlI CACGTG 1 cut(s) 308
PpsI GAGTC 2 cut(s) 108, 310
Ppu21I YACGTR 1 cut(s) 308
PspCI CACGTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 2 cut(s) 70, 173
Sau3AI GATC 1 cut(s) 81
SchI GAGTC 2 cut(s) 108, 311
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 147
SetI ASST 8 cut(s) 20, 55, 126, 193, 207, 310, 331, 366
SmiMI CAYNNNNRTG 2 cut(s) 70, 173
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 87
SspI AATATT 1 cut(s) 107
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 310, 366
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 343
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 2 cut(s) 214, 252
TseFI GTSAC 3 cut(s) 164, 205, 303
Tsp45I GTSAC 3 cut(s) 164, 205, 303
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 2 cut(s) 214, 252
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.