Prupe.6G206900_v2.0.a1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
21529897 .. 21531320
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G206900.1_v2.0.a1.CDS.5

Sequence Viewer

Length: 960 bp
ATGGCCAAGTCTCAAGAGCAGCAACACCCCATGAAGGCCTTTGGATGGGCAGCCAGAGATTCATCTGGTGTTCTCTCTCCCTTCAATTTCTCCAGAAGGCATGAGATTGTTGGAGTAGTGACAGAGGTAGGAAGTAGAGTGCAAAAATACGAAGTTGGAGACAAGGTAGGTGTTGAGTGCCTGGTGGGATCTTGCCAATCTTGTGATAAGTGTGCAAACAATCTTGAGAACTACTGCCCCGGACTTATACTCACCTATGGTGCCAAGTATCACGACGGAATTCCACCACGTATGGAGCACTTCGTGATTCGTATTCCGGATAAGCTGCCTCTTGAGGGTGCTGCTCCTCTCCTTTGTGCCGGGATTACAACCTACAGCCCGTTGAGATATTATGGCCTCGACAAACCCGGCATGCATGTCGGTGTGGTTGGCCTTGGTGGTCTAGGCCATGTGGCAGTGAAATTTGCCAAGGCTATGGGGGTTAGGGTTACAGCGATTAGTACCTCCCCTAGTAAGAAGGAGGAAGCTATTAAACGTCTAAAAGCCGATTCGTTTTTGGTCAGCCGCGAACAAGATCAGATGCTGGCAGCCATGGGCACAATGGATGGTATAATCGACACGGTTTCTGCAGTTCACCCTATCTTGCCTTTGATTCGTTTGTTGAAGACTAACGGAAAACTTGTGGTGCTTGGTGCACCAGAGAAGCCCCATGAGCTTCCTGTTTTTCCTTTGCTAATGGGAAGAAAGATGGTAGGTGGTAGCAACATTGGAGGTGTCAAGGAGACACAAGAGATGATTGATTTTGCAGCCAAGCACAACATAACAGCCGAGGTTGAGGTTATACCTATTGACTATGTGAACACTGCTATGGAGCGCCTCGCGAAAGCGGACGTCAGATACCGATTTGTTATCGACGTTGGAAATACATTGAAGCCTCCTGACTCATGCAATCGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

320

Amino Acids

34.67

Weight (kDa)

8.73

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 894
AccB1I GGYRCC 1 cut(s) 260
AccII CGCG 2 cut(s) 567, 881
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 2 cut(s) 565, 887
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 279, 461
AcyI GRCGYC 1 cut(s) 891
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 1 cut(s) 502
AfiI CCNNNNNNNGG 3 cut(s) 34, 45, 335
AgsI TTSAA 3 cut(s) 85, 664, 931
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 325, 527, 715
AluI AGCT 3 cut(s) 325, 527, 715
Alw21I GWGCWC 2 cut(s) 300, 697
Alw26I GTCTC 3 cut(s) 15, 153, 776
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 583
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 5 cut(s) 3, 36, 394, 430, 445
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 6 cut(s) 19, 50, 325, 341, 587, 806
ApoI RAATTY 2 cut(s) 279, 461
AspLEI GCGC 1 cut(s) 876
AsuC2I CCSGG 3 cut(s) 240, 361, 408
AsuHPI GGTGA 2 cut(s) 244, 626
BaeGI GKGCMC 2 cut(s) 599, 697
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 300, 697
BbvI GCAGC 6 cut(s) 31, 62, 312, 328, 599, 818
BccI CCATC 3 cut(s) 39, 599, 742
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 3 cut(s) 240, 361, 408
BcoDI GTCTC 3 cut(s) 15, 153, 776
BfaI CTAG 2 cut(s) 443, 510
BfmI CTRYAG 2 cut(s) 373, 627
BfoI RGCGCY 1 cut(s) 877
BisI GCNGC 7 cut(s) 20, 51, 326, 342, 565, 588, 807
BlsI GCNGC 7 cut(s) 21, 52, 327, 343, 566, 589, 808
Bme1390I CCNGG 4 cut(s) 182, 240, 361, 408
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 4 cut(s) 182, 240, 361, 408
BmsI GCATC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 245, 353
BpuMI CCSGG 3 cut(s) 240, 361, 408
BsaAI YACGTR 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 891
BsaJI CCNNGG 5 cut(s) 238, 433, 468, 591, 828
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 45, 335
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 5 cut(s) 238, 433, 468, 591, 828
BseGI GGATG 2 cut(s) 50, 610
BseLI CCNNNNNNNGG 3 cut(s) 34, 45, 335
BseRI GAGGAG 1 cut(s) 336
BseSI GKGCMC 2 cut(s) 599, 697
BseXI GCAGC 6 cut(s) 31, 62, 312, 328, 599, 818
Bsh1236I CGCG 2 cut(s) 567, 881
BshFI GGCC 5 cut(s) 5, 38, 396, 432, 447
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 2 cut(s) 300, 697
BsiSI CCGG 4 cut(s) 240, 317, 360, 408
BslI CCNNNNNNNGG 3 cut(s) 34, 45, 335
BsmAI GTCTC 3 cut(s) 15, 153, 776
BsnI GGCC 5 cut(s) 5, 38, 396, 432, 447
Bsp1286I GDGCHC 3 cut(s) 300, 599, 697
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 188, 574
Bsp19I CCATGG 1 cut(s) 591
Bsp68I TCGCGA 1 cut(s) 881
BspACI CCGC 2 cut(s) 565, 887
BspANI GGCC 5 cut(s) 5, 38, 396, 432, 447
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 2 cut(s) 567, 881
BspLI GGNNCC 1 cut(s) 262
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 260
BssECI CCNNGG 5 cut(s) 238, 433, 468, 591, 828
BssMI GATC 2 cut(s) 188, 574
BssNI GRCGYC 1 cut(s) 891
BssT1I CCWWGG 3 cut(s) 433, 468, 591
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 622
BstACI GRCGYC 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 413, 585
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 50, 610
BstFNI CGCG 2 cut(s) 567, 881
BstH2I RGCGCY 1 cut(s) 877
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 2 cut(s) 191, 577
BstMAI GTCTC 3 cut(s) 15, 153, 776
BstMBI GATC 2 cut(s) 188, 574
BstMWI GCNNNNNNNGC 1 cut(s) 712
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 2 cut(s) 415, 419
BstSCI CCNGG 4 cut(s) 180, 238, 359, 406
BstSFI CTRYAG 2 cut(s) 373, 627
BstSLI GKGCMC 2 cut(s) 599, 697
BstUI CGCG 2 cut(s) 567, 881
BstV1I GCAGC 6 cut(s) 31, 62, 312, 328, 599, 818
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 5 cut(s) 5, 38, 396, 432, 447
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 50, 610
BtsI GCAGTG 2 cut(s) 462, 861
BtsIMutI CAGTG 2 cut(s) 462, 861
BtuMI TCGCGA 1 cut(s) 881
Cac8I GCNNGC 2 cut(s) 413, 585
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 1 cut(s) 876
Csp6I GTAC 1 cut(s) 501
CviAII CATG 8 cut(s) 31, 101, 412, 416, 449, 592, 710, 945
CviQI GTAC 1 cut(s) 501
DpnI GATC 2 cut(s) 190, 576
DpnII GATC 2 cut(s) 188, 574
DraIII CACNNNGTG 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 433, 468, 591
Eco147I AGGCCT 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 3 cut(s) 433, 468, 591
EcoT22I ATGCAT 1 cut(s) 417
ErhI CCWWGG 3 cut(s) 433, 468, 591
FaeI CATG 8 cut(s) 34, 104, 415, 419, 452, 595, 713, 948
FatI CATG 8 cut(s) 30, 100, 411, 415, 448, 591, 709, 944
Fnu4HI GCNGC 7 cut(s) 20, 51, 326, 342, 565, 588, 807
FokI GGATG 2 cut(s) 57, 617
Fsp4HI GCNGC 7 cut(s) 20, 51, 326, 342, 565, 588, 807
FspBI CTAG 2 cut(s) 443, 510
GlaI GCGC 1 cut(s) 875
GluI GCNGC 7 cut(s) 20, 51, 326, 342, 565, 588, 807
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 877
HaeIII GGCC 5 cut(s) 5, 38, 396, 432, 447
HapII CCGG 4 cut(s) 240, 317, 360, 408
HhaI GCGC 1 cut(s) 876
Hin1I GRCGYC 1 cut(s) 891
Hin1II CATG 8 cut(s) 34, 104, 415, 419, 452, 595, 713, 948
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HinfI GANTC 5 cut(s) 59, 307, 548, 652, 941
HpaII CCGG 4 cut(s) 240, 317, 360, 408
HphI GGTGA 2 cut(s) 244, 626
Hpy166II GTNNAC 3 cut(s) 634, 695, 859
Hpy188I TCNGA 2 cut(s) 579, 896
Hpy188III TCNNGA 9 cut(s) 14, 93, 224, 272, 304, 317, 332, 880, 938
Hpy8I GTNNAC 3 cut(s) 634, 695, 859
Hpy99I CGWCG 2 cut(s) 278, 917
HpyAV CCTTC 4 cut(s) 28, 90, 91, 511
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4IV ACGT 4 cut(s) 289, 535, 891, 915
HpyCH4V TGCA 7 cut(s) 142, 215, 415, 629, 695, 806, 948
HpyF10VI GCNNNNNNNGC 1 cut(s) 712
HpySE526I ACGT 4 cut(s) 289, 535, 891, 915
Hsp92I GRCGYC 1 cut(s) 891
Hsp92II CATG 8 cut(s) 34, 104, 415, 419, 452, 595, 713, 948
HspAI GCGC 1 cut(s) 874
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 188, 574
LmnI GCTCC 3 cut(s) 295, 349, 871
Lsp1109I GCAGC 6 cut(s) 31, 62, 312, 328, 599, 818
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 443, 510
MaeII ACGT 4 cut(s) 289, 535, 891, 915
MaeIII GTNAC 2 cut(s) 118, 487
MalI GATC 2 cut(s) 190, 576
MboI GATC 2 cut(s) 188, 574
MboII GAAGA 2 cut(s) 676, 753
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 3 cut(s) 300, 599, 697
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 85, 279, 461, 955
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 3 cut(s) 91, 136, 898
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 417
MroI TCCGGA 1 cut(s) 316
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 531, 958
MslI CAYNNNNRTG 2 cut(s) 420, 866
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 240, 317, 360, 408
MspR9I CCNGG 4 cut(s) 182, 240, 361, 408
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 2 cut(s) 567, 881
MwoI GCNNNNNNNGC 1 cut(s) 712
NciI CCSGG 3 cut(s) 240, 361, 408
NcoI CCATGG 1 cut(s) 591
NdeII GATC 2 cut(s) 188, 574
NlaIII CATG 8 cut(s) 34, 104, 415, 419, 452, 595, 713, 948
NlaIV GGNNCC 1 cut(s) 262
NmeAIII GCCGAG 1 cut(s) 853
NmuCI GTSAC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 881
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 2 cut(s) 415, 419
PaeI GCATGC 1 cut(s) 415
PceI AGGCCT 1 cut(s) 38
PfeI GAWTC 4 cut(s) 59, 307, 548, 652
PkrI GCNGC 7 cut(s) 21, 52, 327, 343, 566, 589, 808
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 262
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 188
RruI TCGCGA 1 cut(s) 881
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 2 cut(s) 420, 866
SaqAI TTAA 2 cut(s) 531, 958
SatI GCNGC 7 cut(s) 20, 51, 326, 342, 565, 588, 807
Sau3AI GATC 2 cut(s) 188, 574
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 4 cut(s) 182, 240, 361, 408
SduI GDGCHC 3 cut(s) 300, 599, 697
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 2 cut(s) 373, 627
SmiMI CAYNNNNRTG 2 cut(s) 420, 866
SmlI CTYRAG 3 cut(s) 12, 224, 332
SmoI CTYRAG 3 cut(s) 12, 224, 332
SphI GCATGC 1 cut(s) 415
Sse9I AATT 4 cut(s) 85, 279, 461, 955
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 2 cut(s) 565, 887
SspMI CTAG 2 cut(s) 443, 510
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 4 cut(s) 180, 238, 359, 406
StyI CCWWGG 3 cut(s) 433, 468, 591
TaaI ACNGT 1 cut(s) 622
TaiI ACGT 4 cut(s) 292, 538, 894, 918
TaqI TCGA 4 cut(s) 399, 615, 912, 952
TasI AATT 4 cut(s) 85, 279, 461, 955
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 4 cut(s) 59, 307, 548, 652
Tru1I TTAA 2 cut(s) 531, 958
Tru9I TTAA 2 cut(s) 531, 958
TscAI CASTG 2 cut(s) 462, 868
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 6 cut(s) 19, 50, 325, 341, 587, 806
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 47, 51
TspGWI ACGGA 2 cut(s) 291, 687
TspRI CASTG 2 cut(s) 462, 868
VneI GTGCAC 1 cut(s) 693
XapI RAATTY 2 cut(s) 279, 461
XceI RCATGY 2 cut(s) 415, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XspI CTAG 2 cut(s) 443, 510
ZraI GACGTC 1 cut(s) 892
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.