Prupe.6G216900_v2.0.a1

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
22401061 .. 22402743
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G216900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 564 bp
ATGGAAGGCATCTTGTTCTACACATTCCTCTCCCTCATCTTCATCCTCTTCACCTTCAACTTCTTCCTTCGAAGAACAGAAAGATGTCGTCCCAATCACAAAATCCTCCCACCAACCCCACCTTCTCTTCTTCCACTCCTTGGCCATCTCCAGATCATAAATGAGGGTTTTGCTCATAATGGAGCAAAACACCTTGAAAACTTCTTGCCTATTTTGAATTGGTTTAGTAAGGAGGGGTATGAGAAGAAGTTTGTGAGGATTGCTGAGAGGAAGTCACAACCTGAGCATTACACTGACCAAATCAACAAAGGGCTTACACTGACATTTCCAAACCATATCTCCGAGACTCTCCAGTTGTATCCACCAGGCCCATTGCTAGCACCACGTTTTTCATCCGGGGACTGCACCACCGTTGGATTCAATATACCACGTGACACAATCTTATTAGCCAATGTATGGGCCATACATAGGGACCCTAAGCCGTGGGAAGATGCAAAAAGTTTCAAGCCAGAAAGGTTTGAGGGCAACCAGAACATGTCGTATAAGAGCACTTCCACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

188

Amino Acids

21.62

Weight (kDa)

9.12

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 140, 456
AcoI YGGCCR 1 cut(s) 142
AcvI CACGTG 1 cut(s) 431
AfiI CCNNNNNNNGG 3 cut(s) 140, 456, 468
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 5 cut(s) 58, 197, 217, 421, 505
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 338
AoxI GGCC 3 cut(s) 142, 367, 459
AspS9I GGNCC 3 cut(s) 368, 459, 472
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 376
AvaII GGWCC 1 cut(s) 472
BalI TGGCCA 1 cut(s) 144
BbrPI CACGTG 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 551
BccI CCATC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 369
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 366, 397
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 368, 459, 472
BmiI GGNNCC 2 cut(s) 473, 474
BmrFI CCNGG 2 cut(s) 366, 397
BmsI GCATC 2 cut(s) 18, 481
BmtI GCTAGC 1 cut(s) 380
BpmI CTGGAG 2 cut(s) 134, 335
Bpu10I CCTNAGC 2 cut(s) 282, 477
Bpu14I TTCGAA 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 397
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 139, 396, 482
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 456, 468
Bse1I ACTGG 2 cut(s) 352, 558
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 139, 396, 482
BseGI GGATG 2 cut(s) 42, 392
BseLI CCNNNNNNNGG 3 cut(s) 140, 456, 468
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 255, 273
BseNI ACTGG 2 cut(s) 352, 558
BsgI GTGCAG 1 cut(s) 388
BshFI GGCC 3 cut(s) 144, 369, 461
BsiHKAI GWGCWC 1 cut(s) 551
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 3 cut(s) 75, 413, 485
BslI CCNNNNNNNGG 3 cut(s) 140, 456, 468
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 3 cut(s) 75, 413, 485
BsnI GGCC 3 cut(s) 144, 369, 461
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 3 cut(s) 144, 369, 461
BspCNI CTCAG 2 cut(s) 256, 274
BspLI GGNNCC 2 cut(s) 473, 474
BspOI GCTAGC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 2 cut(s) 352, 558
BssECI CCNNGG 3 cut(s) 139, 396, 482
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 53, 132
BstBAI YACGTR 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 264, 282, 477
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 2 cut(s) 42, 392
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 364, 395
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 3 cut(s) 144, 369, 461
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 2 cut(s) 42, 392
BtsIMutI CAGTG 2 cut(s) 291, 317
Cac8I GCNNGC 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 368, 459, 472
CviAII CATG 1 cut(s) 535
CviJI RGCY 7 cut(s) 144, 313, 369, 449, 461, 481, 508
CviKI_1 RGCY 7 cut(s) 144, 313, 369, 449, 461, 481, 508
DdeI CTNAG 3 cut(s) 264, 282, 477
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 53, 132
EarI CTCTTC 2 cut(s) 53, 132
Eco130I CCWWGG 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 472
Eco72I CACGTG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 538
FaqI GGGAC 3 cut(s) 75, 413, 485
FatI CATG 1 cut(s) 534
FokI GGATG 2 cut(s) 29, 379
FspBI CTAG 1 cut(s) 377
GsuI CTGGAG 2 cut(s) 134, 335
HaeIII GGCC 3 cut(s) 144, 369, 461
HapII CCGG 1 cut(s) 396
Hin1II CATG 1 cut(s) 538
HinfI GANTC 2 cut(s) 346, 417
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 64, 77, 132
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 385, 430
HpyCH4V TGCA 2 cut(s) 405, 494
HpyF3I CTNAG 3 cut(s) 264, 282, 477
HpySE526I ACGT 2 cut(s) 385, 430
Hsp92II CATG 1 cut(s) 538
KflI GGGWCCC 1 cut(s) 472
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 164, 294, 351, 365, 378, 409, 522, 542
LweI GCATC 2 cut(s) 18, 481
MaeI CTAG 1 cut(s) 377
MaeII ACGT 2 cut(s) 385, 430
MaeIII GTNAC 2 cut(s) 273, 431
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 8 cut(s) 31, 40, 55, 84, 119, 122, 256, 500
MhlI GDGCHC 1 cut(s) 551
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 1 cut(s) 217
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 9 cut(s) 38, 44, 56, 116, 157, 226, 249, 261, 514
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 144
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 366, 397
MvaI CCWGG 1 cut(s) 366
NciI CCSGG 1 cut(s) 397
NdeII GATC 1 cut(s) 153
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 2 cut(s) 473, 474
NmuCI GTSAC 2 cut(s) 273, 431
NspI RCATGY 1 cut(s) 538
NspV TTCGAA 1 cut(s) 70
PciI ACATGT 1 cut(s) 534
PfeI GAWTC 1 cut(s) 417
PflMI CCANNNNNTGG 2 cut(s) 140, 456
PleI GAGTC 1 cut(s) 340
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 340
Ppu21I YACGTR 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 472
PscI ACATGT 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 364
PspCI CACGTG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 473, 474
PspPI GGNCC 3 cut(s) 368, 459, 472
PspPPI RGGWCCY 1 cut(s) 472
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 3 cut(s) 368, 459, 472
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 366, 397
SduI GDGCHC 1 cut(s) 551
SetI ASST 7 cut(s) 56, 124, 195, 283, 388, 433, 518
SfaNI GCATC 2 cut(s) 18, 481
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 472
Sse9I AATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 364, 395
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 388, 433
TaqI TCGA 1 cut(s) 70
TasI AATT 1 cut(s) 217
TfiI GAWTC 1 cut(s) 417
TscAI CASTG 2 cut(s) 298, 324
TseFI GTSAC 2 cut(s) 273, 431
Tsp45I GTSAC 2 cut(s) 273, 431
TspDTI ATGAA 2 cut(s) 31, 381
TspRI CASTG 2 cut(s) 298, 324
Van91I CCANNNNNTGG 2 cut(s) 140, 456
VpaK11BI GGWCC 1 cut(s) 472
XceI RCATGY 1 cut(s) 538
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.