Prupe.6G218700_v2.0.a1

Serine carboxypeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
22523143 .. 22524177
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218700.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 567 bp
ATGATTGTTCCAGTTGTAGCTGAAGAAATAGCAAAGGTTGCATGCTATGATACTGCAGGTATTGAAGCTGGAAGCATACCAGAAATCAATTTCAAAGGTTATTTACTCAGGAACCCATCGACAGATATTAATATTGATGCAAATTCAAGGGTTCCATTTGCCCATCGACTCGCACTTATACCAGATGAACTCTACAAGTCAGCAAAAAAGAGTTGCAGAGGACTGTACACAGGAATCAACCAAAGCAATAAACAATGTGCAATGGATCTCCAGGCTTTCTCAGTGTGCACTGAAAAATTAAATTTTGAGCTCATCTTGGAGCCTCAGTGTAGACCAAGCTCTGATTCAAATAGTAAGGACCACCAGAAGAATCTCCTGGAAAGCTCGGAAGATTCGCAATTTAAACTTAACTTGATTCATCTGAGCCTTTTTCCAAAACTTCAAGAGCCAGGACTTGGTTTTCCAAAATTTGGGTGCAGGGATTACAAGAATTTACTCATCCATGTTTGGGCGAACGATGATAATGTTCAAAAGGCGCTTCATGTTCACAATGTAAGAGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

189

Amino Acids

21.12

Weight (kDa)

6.3

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AccB7I CCANNNNNTGG 2 cut(s) 455, 470
AccI GTMKAC 1 cut(s) 331
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 4 cut(s) 142, 301, 467, 490
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 455, 470, 508
AgsI TTSAA 6 cut(s) 65, 94, 147, 348, 443, 530
AjnI CCWGG 3 cut(s) 270, 375, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 5 cut(s) 20, 68, 310, 339, 384
AluI AGCT 5 cut(s) 20, 68, 310, 339, 384
Alw21I GWGCWC 2 cut(s) 290, 312
Alw44I GTGCAC 1 cut(s) 286
AlwI GGATC 1 cut(s) 273
ApaLI GTGCAC 1 cut(s) 286
ApoI RAATTY 4 cut(s) 142, 301, 467, 490
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 358
AvaII GGWCC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 290, 312
BccI CCATC 2 cut(s) 124, 171
BciT130I CCWGG 3 cut(s) 272, 377, 450
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 272, 377, 450
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 3 cut(s) 113, 153, 321
BmrFI CCNGG 3 cut(s) 272, 377, 450
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 455, 470, 508
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 3 cut(s) 272, 377, 450
BseGI GGATG 1 cut(s) 498
BseLI CCNNNNNNNGG 3 cut(s) 455, 470, 508
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 4 cut(s) 121, 294, 338, 413
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 496
BsiHKAI GWGCWC 2 cut(s) 290, 312
BslI CCNNNNNNNGG 3 cut(s) 455, 470, 508
Bsp1286I GDGCHC 2 cut(s) 290, 312
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 265
BspCNI CTCAG 4 cut(s) 120, 293, 337, 414
BspLI GGNNCC 3 cut(s) 113, 153, 321
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 11
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 3 cut(s) 272, 377, 450
Bst4CI ACNGT 1 cut(s) 225
BstAPI GCANNNNNTGC 1 cut(s) 38
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 4 cut(s) 107, 280, 324, 422
BstF5I GGATG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 3 cut(s) 272, 377, 450
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 3 cut(s) 270, 375, 448
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtsCI GGATG 1 cut(s) 498
BtsIMutI CAGTG 3 cut(s) 288, 288, 332
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 42, 503, 542
CviJI RGCY 9 cut(s) 20, 68, 275, 310, 322, 339, 384, 426, 448
CviKI_1 RGCY 9 cut(s) 20, 68, 275, 310, 322, 339, 384, 426, 448
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 107, 280, 324, 422
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraI TTTAAA 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 310
EcoRII CCWGG 3 cut(s) 270, 375, 448
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 3 cut(s) 45, 506, 545
FaiI YATR 6 cut(s) 43, 48, 77, 179, 504, 543
FatI CATG 3 cut(s) 41, 502, 541
FblI GTMKAC 1 cut(s) 331
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 312
GlaI GCGC 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 539
HhaI GCGC 1 cut(s) 538
Hin1II CATG 3 cut(s) 45, 506, 545
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HinfI GANTC 6 cut(s) 168, 234, 344, 370, 392, 415
Hpy166II GTNNAC 4 cut(s) 228, 288, 332, 547
Hpy188I TCNGA 3 cut(s) 343, 388, 423
Hpy188III TCNNGA 2 cut(s) 109, 443
Hpy8I GTNNAC 4 cut(s) 228, 288, 332, 547
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 7 cut(s) 41, 56, 140, 216, 260, 288, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 107, 280, 324, 422
Hsp92II CATG 3 cut(s) 45, 506, 545
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 319
LweI GCATC 1 cut(s) 127
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 3 cut(s) 35, 379, 401
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 290, 312
MluCI AATT 7 cut(s) 88, 142, 296, 301, 398, 467, 490
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 2 cut(s) 212, 333
MseI TTAA 4 cut(s) 129, 299, 402, 408
MspR9I CCNGG 3 cut(s) 272, 377, 450
MvaI CCWGG 3 cut(s) 272, 377, 450
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 1 cut(s) 265
NlaIII CATG 3 cut(s) 45, 506, 545
NlaIV GGNNCC 3 cut(s) 113, 153, 321
NspI RCATGY 1 cut(s) 45
PaeI GCATGC 1 cut(s) 45
PfeI GAWTC 5 cut(s) 234, 344, 370, 392, 415
PflMI CCANNNNNTGG 2 cut(s) 455, 470
PfoI TCCNGGA 1 cut(s) 375
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 270, 375, 448
PspGI CCWGG 3 cut(s) 270, 375, 448
PspN4I GGNNCC 3 cut(s) 113, 153, 321
PspPI GGNCC 1 cut(s) 358
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 129, 299, 402, 408
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 358
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 3 cut(s) 272, 377, 450
SduI GDGCHC 2 cut(s) 290, 312
SetI ASST 8 cut(s) 22, 39, 61, 70, 100, 312, 341, 386
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 358
SphI GCATGC 1 cut(s) 45
Sse9I AATT 7 cut(s) 88, 142, 296, 301, 398, 467, 490
SspI AATATT 1 cut(s) 133
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 270, 375, 448
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 119, 166
TasI AATT 7 cut(s) 88, 142, 296, 301, 398, 467, 490
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 5 cut(s) 234, 344, 370, 392, 415
Tru1I TTAA 4 cut(s) 129, 299, 402, 408
Tru9I TTAA 4 cut(s) 129, 299, 402, 408
TscAI CASTG 3 cut(s) 288, 295, 332
TspDTI ATGAA 3 cut(s) 201, 407, 530
TspRI CASTG 3 cut(s) 288, 295, 332
Van91I CCANNNNNTGG 2 cut(s) 455, 470
VneI GTGCAC 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 358
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 4 cut(s) 142, 301, 467, 490
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.