Prupe.6G222800_v2.0.a1

RNA binding

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
22790484 .. 22791822
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G222800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 252 bp
ATGTCAAGTGTTGAGAAGGATGATGAGGAGGCCTTTTCTCTGTTCGGTGAGATCATCGAATCGAAGATCATCAACGACCGTGAGACCGAGAGGTCTAGGGGCTTCGGCTTCGTCACTTTCAACCACGAAAAGAACCTCGACGGCCGTAACATCACTATCAATGAGGCCCAATCTGGTGGAAGCGGCGATGGTGGTGGTGGTAATGGAGGTTACAACTGCGGAGGATATGGATCTAGCGGCGTTGGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009059 GO:0009266 GO:0009314 GO:0009409 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0017148 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030308 GO:0030371 GO:0030425 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0033554 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0035194 GO:0035195 GO:0035196 GO:0035770 GO:0036464 GO:0036477 GO:0040008 GO:0040029 GO:0042221 GO:0042995 GO:0043005 GO:0043021 GO:0043023 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043487 GO:0043488 GO:0043489 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045182 GO:0045727 GO:0045926 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070417 GO:0070887 GO:0070918 GO:0070925 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901698 GO:1901699 GO:1901987 GO:1902369 GO:1902373 GO:1902806 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

8.75

Weight (kDa)

4.45

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AciI CCGC 3 cut(s) 183, 219, 237
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 142
AgsI TTSAA 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 238
AoxI GGCC 3 cut(s) 30, 142, 165
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 59
BccI CCATC 1 cut(s) 182
BceAI ACGGC 2 cut(s) 129, 157
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 96, 234
BisI GCNGC 2 cut(s) 184, 238
BlsI GCNGC 2 cut(s) 185, 239
BmgT120I GGNCC 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 229
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 41
BseX3I CGGCCG 1 cut(s) 142
Bsh1285I CGRYCG 2 cut(s) 79, 145
BshFI GGCC 3 cut(s) 32, 144, 167
BsiEI CGRYCG 2 cut(s) 79, 145
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 3 cut(s) 32, 144, 167
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 51, 66, 230
BspACI CCGC 3 cut(s) 183, 219, 237
BspANI GGCC 3 cut(s) 32, 144, 167
BspPI GGATC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 77
BssMI GATC 3 cut(s) 51, 66, 230
Bst4CI ACNGT 1 cut(s) 80
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 3 cut(s) 54, 69, 233
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 51, 66, 230
BstMCI CGRYCG 2 cut(s) 79, 145
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 230
BstZI CGGCCG 1 cut(s) 142
BsuRI GGCC 3 cut(s) 32, 144, 167
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 166
CviJI RGCY 6 cut(s) 32, 102, 108, 144, 167, 246
CviKI_1 RGCY 6 cut(s) 32, 102, 108, 144, 167, 246
DpnI GATC 3 cut(s) 53, 68, 232
DpnII GATC 3 cut(s) 51, 66, 230
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 142
EagI CGGCCG 1 cut(s) 142
EclXI CGGCCG 1 cut(s) 142
Eco147I AGGCCT 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 142
FaiI YATR 1 cut(s) 228
Fnu4HI GCNGC 2 cut(s) 184, 238
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 184, 238
FspBI CTAG 2 cut(s) 96, 234
GluI GCNGC 2 cut(s) 184, 238
HaeIII GGCC 3 cut(s) 32, 144, 167
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 51, 66, 230
LpnPI CCDG 1 cut(s) 159
MaeI CTAG 2 cut(s) 96, 234
MaeIII GTNAC 3 cut(s) 112, 146, 209
MalI GATC 3 cut(s) 53, 68, 232
MboI GATC 3 cut(s) 51, 66, 230
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 230
MnlI CCTC 7 cut(s) 19, 22, 84, 146, 157, 200, 215
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 3 cut(s) 51, 66, 230
NmuCI GTSAC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 32
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 185, 239
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 230
SatI GCNGC 2 cut(s) 184, 238
Sau3AI GATC 3 cut(s) 51, 66, 230
Sau96I GGNCC 1 cut(s) 166
SetI ASST 3 cut(s) 95, 138, 211
SgeI CNNG 8 cut(s) 18, 92, 100, 108, 137, 149, 186, 246
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 3 cut(s) 183, 219, 237
SspMI CTAG 2 cut(s) 96, 234
StuI AGGCCT 1 cut(s) 32
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 57, 62, 138
TaqII GACCGA 1 cut(s) 101
TauI GCSGC 2 cut(s) 186, 240
TfiI GAWTC 1 cut(s) 59
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
XspI CTAG 2 cut(s) 96, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.