Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23095176 .. 23096082

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G226700.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTTACACCAACCTCCCGCCAAGCCCGCTTTCTCTTCCAGTCCTCGGCCATCTCTATCTCGTAAAACCCAGTCTACCAAACCTTCCACCGGCTCTCCCAAAAACACGGCCCGATCCAGCGCGTGGCCAATGGTCATAGTTTTCATCCTCGTCCGCTGTGCTGTCCAAGAGTGTTTCACCAAAAATGACGTTGTTTCGGCAAACCGTCCTTCACTGCTCCTAAGCAAGCACTTAGGCTACAACAACACCATCGTCACAACCTGCCCACACGGCGATCATTGGCGCAACCTCCGGCGCATCGGCGCCATCGAGATCTTCCCCTCCGCTCGACCCAATGCATTCGCGGACGTGCGAAAAGACAAAGTCAAATACTTAATACGCAAACTTTCACAAAACTCGATTCATGGTTTTGCAAAGGAGACTCATCCTGATTATTATACTGACCAACTCATCAAGGGCCTTATACTGGTCATTTTATTGGCTGGTATCGATACATCATCAGTGACATTGGAATGGGCCATGTGTCATCCACTCAATAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

182

Amino Acids

20.17

Weight (kDa)

9.93

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	74
AccII	CGCG	2 cut(s)	122, 344
AciI	CCGC	5 cut(s)	18, 27, 154, 324, 344
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	2 cut(s)	47, 125
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	4 cut(s)	45, 89, 123, 466
AjiI	CACGTC	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	5 cut(s)	47, 108, 125, 457, 516
AspLEI	GCGC	4 cut(s)	122, 285, 297, 305
AspS9I	GGNCC	3 cut(s)	109, 457, 516
AsuHPI	GGTGA	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	302
BccI	CCATC	3 cut(s)	58, 257, 314
BceAI	ACGGC	2 cut(s)	123, 286
BcoDI	GTCTC	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	312
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	3 cut(s)	109, 457, 516
BmiI	GGNNCC	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 89, 123, 466
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	39, 70, 471
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	3 cut(s)	144, 424, 526
BseLI	CCNNNNNNNGG	4 cut(s)	45, 89, 123, 466
BseNI	ACTGG	3 cut(s)	39, 70, 471
Bsh1236I	CGCG	2 cut(s)	122, 344
BshFI	GGCC	5 cut(s)	49, 110, 127, 459, 518
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	90, 292
BslI	CCNNNNNNNGG	4 cut(s)	45, 89, 123, 466
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	5 cut(s)	49, 110, 127, 459, 518
Bsp143I	GATC	3 cut(s)	113, 274, 312
BspACI	CCGC	5 cut(s)	18, 27, 154, 324, 344
BspANI	GGCC	5 cut(s)	49, 110, 127, 459, 518
BspDI	ATCGAT	1 cut(s)	489
BspFNI	CGCG	2 cut(s)	122, 344
BspLI	GGNNCC	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	39, 70, 471
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	113, 274, 312
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	27, 227
BstDEI	CTNAG	2 cut(s)	221, 232
BstF5I	GGATG	3 cut(s)	144, 424, 526
BstFNI	CGCG	2 cut(s)	122, 344
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	4 cut(s)	122, 285, 297, 305
BstKTI	GATC	3 cut(s)	116, 277, 315
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	3 cut(s)	113, 274, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 270
BstUI	CGCG	2 cut(s)	122, 344
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	5 cut(s)	49, 110, 127, 459, 518
BsuTUI	ATCGAT	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	3 cut(s)	144, 424, 526
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 507
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	27, 227
CfoI	GCGC	4 cut(s)	122, 285, 297, 305
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	109, 457, 516
ClaI	ATCGAT	1 cut(s)	489
CviAII	CATG	2 cut(s)	404, 520
CviJI	RGCY	9 cut(s)	25, 49, 93, 110, 127, 237, 459, 482, 518
CviKI_1	RGCY	9 cut(s)	25, 49, 93, 110, 127, 237, 459, 482, 518
DdeI	CTNAG	2 cut(s)	221, 232
DinI	GGCGCC	1 cut(s)	304
DpnI	GATC	3 cut(s)	115, 276, 314
DpnII	GATC	3 cut(s)	113, 274, 312
EaeI	YGGCCR	2 cut(s)	47, 125
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	340
EgeI	GGCGCC	1 cut(s)	304
EheI	GGCGCC	1 cut(s)	304
FaeI	CATG	2 cut(s)	407, 523
FaiI	YATR	6 cut(s)	137, 405, 438, 464, 521, 544
FatI	CATG	2 cut(s)	403, 519
FauI	CCCGC	2 cut(s)	25, 34
FblI	GTMKAC	1 cut(s)	74
FokI	GGATG	3 cut(s)	131, 411, 513
GlaI	GCGC	4 cut(s)	121, 284, 296, 304
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	5 cut(s)	49, 110, 127, 459, 518
HapII	CCGG	2 cut(s)	90, 292
HhaI	GCGC	4 cut(s)	122, 285, 297, 305
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	407, 523
Hin6I	GCGC	4 cut(s)	120, 283, 295, 303
HinP1I	GCGC	4 cut(s)	120, 283, 295, 303
HinfI	GANTC	2 cut(s)	400, 421
HpaII	CCGG	2 cut(s)	90, 292
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	310, 428
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	93, 219
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	189, 348
HpyCH4V	TGCA	2 cut(s)	338, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 270
HpyF3I	CTNAG	2 cut(s)	221, 232
HpySE526I	ACGT	2 cut(s)	189, 348
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	407, 523
HspAI	GCGC	4 cut(s)	120, 283, 295, 303
KasI	GGCGCC	1 cut(s)	302
Kzo9I	GATC	3 cut(s)	113, 274, 312
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	9 cut(s)	52, 83, 103, 130, 274, 305, 441, 452, 468
LweI	GCATC	1 cut(s)	306
MaeII	ACGT	2 cut(s)	189, 348
MaeIII	GTNAC	3 cut(s)	3, 253, 502
MalI	GATC	3 cut(s)	115, 276, 314
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	3 cut(s)	113, 274, 312
MboII	GAAGA	2 cut(s)	27, 307
MflI	RGATCY	1 cut(s)	312
MlsI	TGGCCA	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	127
Mly113I	GGCGCC	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	5 cut(s)	24, 54, 158, 299, 331
Mox20I	TGGCCA	1 cut(s)	127
Mph1103I	ATGCAT	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	511
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	90, 292
Mva1269I	GAATGC	1 cut(s)	338
MvnI	CGCG	2 cut(s)	122, 344
MwoI	GCNNNNNNNGC	2 cut(s)	26, 270
NarI	GGCGCC	1 cut(s)	303
NdeII	GATC	3 cut(s)	113, 274, 312
NlaIII	CATG	2 cut(s)	407, 523
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	253, 502
NsiI	ATGCAT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	400
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	123
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	109, 457, 516
PsuI	RGATCY	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	113, 274, 312
Sau96I	GGNCC	3 cut(s)	109, 457, 516
SchI	GAGTC	1 cut(s)	415
SetI	ASST	6 cut(s)	16, 85, 192, 263, 291, 351
SfaNI	GCATC	1 cut(s)	306
SfoI	GGCGCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	511
SsiI	CCGC	5 cut(s)	18, 27, 154, 324, 344
SspDI	GGCGCC	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	2 cut(s)	192, 351
TaqI	TCGA	4 cut(s)	309, 328, 398, 489
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	2 cut(s)	219, 507
TseFI	GTSAC	2 cut(s)	253, 502
Tsp45I	GTSAC	2 cut(s)	253, 502
TspDTI	ATGAA	2 cut(s)	133, 392
TspRI	CASTG	2 cut(s)	219, 507
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.