Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23162918 .. 23164638

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G227500.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCATTCCACAGAAGCACGTCCCTCATTTTCATCATTTTCCTCACTTTCATTAACTTCTTCCTCCAAAGAAAACGACGTCGTGAAAATCAAGAAAACTACCCACCAAGCCCACCTTCTTTGCCCATCATCGGCCATCTCCACCTCCTAAAGCCTCCGCAACATCGAGCCTTCCACCGTCTCTCCCAAAAACACGGACCCATTTTTTCTTTCCGGATGGGTTCACATCCTATGCCGTACATGAATGCTTCACCAAAAAACGACATTGTTTTAGCAAACCGTCCTGTATTGATCATCGACAAGCACTTATTCTACAACAACTCCACTATGATAACGTCCTCATACGGCGATCACTGGCGCAACATTCGCCACATCTGCGCCATCGAGATCTTCTCTTCTGCTCGCCTCAACGCTTTCTTGAACATCAGCAAGGACAAAGTCAAACACTTGCTACACAAACTTTCACAACAGTCATCATCACGTCAAGATGGTTATTTTGCAAAGAATATCCTAGTGACAATGGTGGCGGGCAAGAGGTACTGTGCCAGGCAGTTCAAAGAGATTATTAACCAGGTCACGAAGTATGCTGGGGTACCGAACCCAGGAGAAATTTGGCCCATTTTGAATTGGATAGGGTATGAGAAGAAGATGATGATGAAGTTGGGTGAGAGGACAGATGTGTTCTTGCAAGGGCTCATTGATGAGCACCAGATGAAGAAGACTACAACTGAACTTGATGCTCAACTTGGCCAAGAACGCTTAGTGGACGAACCAGACATCTTAAAACTACCCTACTTACAATGTATAGTCTCTGAGACCCTTCGATTGTGCCCACCTCCCCCAATGTTAATACCACATGTTTCATCTAATGAATGCACAATTGAAGGATTCAAAGTGCTACGTGACACGACGGTATTGGTAAATGCATGGGCCATACAAAGAGACCCTAACTTGTGGGATGATCCTGAAAGTTTCAAGCCTGAGAGGTTTGAAAGTGGTAAGGATTTGTCACACAAATTTATGCCATTTGGACTTGGAAGAAGGGCTTGCCCTGGAGCGGGCCTTGCCCAACGTGTTGTCGGTTTGACTTTGGGGTCGTTGATCCAATGCTTTGAGCGGGAGAGAGTTAGTGAAAAGGTGGTTGATATGACTGAAGGTGAAGGGCTTACCATGCCTAAACTTGTGCCATTGGAGGCCATGTGTAAAGTACGTACAGTCGTGAAGAAGGTTCTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00905 ko00943 ko00980 ko01100 ko01110 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00905 map00943 map00980 map01100 map01110 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

413

Amino Acids

47.35

Weight (kDa)

9.49

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1093
AatII	GACGTC	1 cut(s)	82
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AccBSI	CCGCTC	2 cut(s)	1058, 1117
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	4 cut(s)	158, 527, 1058, 1117
AclWI	GGATC	2 cut(s)	956, 1096
AcoI	YGGCCR	2 cut(s)	133, 748
AcsI	RAATTY	2 cut(s)	609, 1016
AcuI	CTGAAG	1 cut(s)	1173
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	5 cut(s)	239, 539, 594, 1209, 1213
AfiI	CCNNNNNNNGG	4 cut(s)	131, 602, 1057, 1058
AflIII	ACRYGT	2 cut(s)	856, 1072
AgsI	TTSAA	7 cut(s)	421, 556, 625, 884, 892, 976, 992
AjiI	CACGTC	2 cut(s)	21, 482
AjnI	CCWGG	4 cut(s)	545, 570, 601, 1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	4 cut(s)	185, 809, 814, 936
AlwI	GGATC	2 cut(s)	956, 1096
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	6 cut(s)	133, 614, 748, 930, 1060, 1194
ApoI	RAATTY	2 cut(s)	609, 1016
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	360, 380
AspS9I	GGNCC	4 cut(s)	197, 615, 930, 1060
AsuHPI	GGTGA	3 cut(s)	243, 677, 1169
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	833
BalI	TGGCCA	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	708
BccI	CCATC	5 cut(s)	134, 144, 211, 389, 482
BceAI	ACGGC	2 cut(s)	220, 361
BciT130I	CCWGG	4 cut(s)	547, 572, 603, 1053
BclI	TGATCA	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	185, 809, 814, 936
BfaI	CTAG	1 cut(s)	512
BglII	AGATCT	1 cut(s)	387
Bme1390I	CCNGG	4 cut(s)	547, 572, 603, 1053
Bme18I	GGWCC	1 cut(s)	197
BmgBI	CACGTC	2 cut(s)	21, 482
BmgT120I	GGNCC	4 cut(s)	197, 615, 930, 1060
BmiI	GGNNCC	2 cut(s)	199, 594
BmrFI	CCNGG	4 cut(s)	547, 572, 603, 1053
BmsI	GCATC	1 cut(s)	727
BpiI	GAAGAC	1 cut(s)	725
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	1074
BsaAI	YACGTR	2 cut(s)	902, 1211
BsaHI	GRCGYC	1 cut(s)	79
BsaI	GGTCTC	2 cut(s)	809, 936
BsaJI	CCNNGG	2 cut(s)	601, 1051
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	6 cut(s)	167, 197, 305, 335, 1184, 1214
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 602, 1057, 1058
Bse1I	ACTGG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	4 cut(s)	547, 572, 603, 1053
BseDI	CCNNGG	2 cut(s)	601, 1051
BseGI	GGATG	3 cut(s)	222, 226, 964
BseLI	CCNNNNNNNGG	4 cut(s)	131, 602, 1057, 1058
BseMII	CTCAG	2 cut(s)	804, 972
BseNI	ACTGG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	833
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	6 cut(s)	135, 616, 750, 932, 1062, 1196
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	4 cut(s)	131, 602, 1057, 1058
BsmAI	GTCTC	4 cut(s)	185, 809, 814, 936
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	7
BsmI	GAATGC	2 cut(s)	250, 878
BsnI	GGCC	6 cut(s)	135, 616, 750, 932, 1062, 1196
Bso31I	GGTCTC	2 cut(s)	809, 936
Bsp1286I	GDGCHC	3 cut(s)	696, 708, 833
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	5 cut(s)	291, 349, 387, 961, 1101
BspACI	CCGC	4 cut(s)	158, 527, 1058, 1117
BspANI	GGCC	6 cut(s)	135, 616, 750, 932, 1062, 1196
BspCNI	CTCAG	2 cut(s)	805, 973
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	199, 594
BspPI	GGATC	2 cut(s)	956, 1096
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	2 cut(s)	809, 936
BsrBI	CCGCTC	2 cut(s)	1058, 1117
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	601, 1051
BssMI	GATC	5 cut(s)	291, 349, 387, 961, 1101
BssNI	GRCGYC	1 cut(s)	79
Bst2UI	CCWGG	4 cut(s)	547, 572, 603, 1053
Bst4CI	ACNGT	6 cut(s)	179, 281, 471, 542, 913, 1216
Bst6I	CTCTTC	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	79
BstBAI	YACGTR	2 cut(s)	902, 1211
BstC8I	GCNNGC	4 cut(s)	403, 529, 1048, 1060
BstDEI	CTNAG	3 cut(s)	760, 813, 981
BstF5I	GGATG	3 cut(s)	222, 226, 964
BstHHI	GCGC	2 cut(s)	360, 380
BstKTI	GATC	5 cut(s)	294, 352, 390, 964, 1104
BstMAI	GTCTC	4 cut(s)	185, 809, 814, 936
BstMBI	GATC	5 cut(s)	291, 349, 387, 961, 1101
BstMWI	GCNNNNNNNGC	5 cut(s)	366, 375, 756, 1064, 1171
BstNI	CCWGG	4 cut(s)	547, 572, 603, 1053
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	4 cut(s)	545, 570, 601, 1051
BstSLI	GKGCMC	1 cut(s)	833
BstSNI	TACGTA	1 cut(s)	1211
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	6 cut(s)	135, 616, 750, 932, 1062, 1196
BtrI	CACGTC	2 cut(s)	21, 482
BtsCI	GGATG	3 cut(s)	222, 226, 964
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	4 cut(s)	403, 529, 1048, 1060
CfoI	GCGC	2 cut(s)	360, 380
Cfr13I	GGNCC	4 cut(s)	197, 615, 930, 1060
CsiI	ACCWGGT	1 cut(s)	570
Csp6I	GTAC	5 cut(s)	238, 538, 593, 1208, 1212
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	5 cut(s)	241, 857, 927, 1171, 1198
CviQI	GTAC	5 cut(s)	238, 538, 593, 1208, 1212
DdeI	CTNAG	3 cut(s)	760, 813, 981
DpnI	GATC	5 cut(s)	293, 351, 389, 963, 1103
DpnII	GATC	5 cut(s)	291, 349, 387, 961, 1101
DrdI	GACNNNNNNGTC	1 cut(s)	1093
DseDI	GACNNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	2 cut(s)	133, 748
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco105I	TACGTA	1 cut(s)	1211
Eco24I	GRGCYC	1 cut(s)	696
Eco31I	GGTCTC	2 cut(s)	809, 936
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	1173
EcoRII	CCWGG	4 cut(s)	545, 570, 601, 1051
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	5 cut(s)	244, 860, 930, 1174, 1201
FalI	AAGNNNNNCTT	4 cut(s)	100, 132, 1030, 1062
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	5 cut(s)	240, 856, 926, 1170, 1197
FauI	CCCGC	3 cut(s)	520, 1051, 1110
FbaI	TGATCA	1 cut(s)	291
FokI	GGATG	3 cut(s)	213, 229, 971
FriOI	GRGCYC	1 cut(s)	696
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	2 cut(s)	359, 379
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	1074
HaeIII	GGCC	6 cut(s)	135, 616, 750, 932, 1062, 1196
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	2 cut(s)	360, 380
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	5 cut(s)	244, 860, 930, 1174, 1201
Hin6I	GCGC	2 cut(s)	358, 378
HinP1I	GCGC	2 cut(s)	358, 378
HinfI	GANTC	1 cut(s)	888
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	3 cut(s)	243, 677, 1169
Hpy166II	GTNNAC	2 cut(s)	224, 766
Hpy188I	TCNGA	1 cut(s)	814
Hpy188III	TCNNGA	9 cut(s)	83, 92, 214, 385, 418, 485, 577, 965, 1219
Hpy8I	GTNNAC	2 cut(s)	224, 766
Hpy99I	CGWCG	3 cut(s)	81, 84, 913
HpyAV	CCTTC	8 cut(s)	126, 181, 830, 878, 1035, 1148, 1154, 1219
HpyCH4III	ACNGT	6 cut(s)	179, 281, 471, 542, 913, 1216
HpyCH4IV	ACGT	7 cut(s)	20, 79, 335, 481, 901, 1072, 1210
HpyCH4V	TGCA	4 cut(s)	500, 688, 876, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	366, 375, 756, 1064, 1171
HpyF3I	CTNAG	3 cut(s)	760, 813, 981
HpySE526I	ACGT	7 cut(s)	20, 79, 335, 481, 901, 1072, 1210
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	5 cut(s)	244, 860, 930, 1174, 1201
HspAI	GCGC	2 cut(s)	358, 378
Kpn2I	TCCGGA	1 cut(s)	213
KpnI	GGTACC	1 cut(s)	596
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	5 cut(s)	291, 349, 387, 961, 1101
LmnI	GCTCC	1 cut(s)	1055
LweI	GCATC	1 cut(s)	727
MabI	ACCWGGT	1 cut(s)	570
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	7 cut(s)	20, 79, 335, 481, 901, 1072, 1210
MaeIII	GTNAC	4 cut(s)	514, 574, 902, 1008
MalI	GATC	5 cut(s)	293, 351, 389, 963, 1103
MbiI	CCGCTC	2 cut(s)	1058, 1117
MboI	GATC	5 cut(s)	291, 349, 387, 961, 1101
MboII	GAAGA	9 cut(s)	52, 382, 387, 655, 658, 727, 730, 1050, 1234
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	696, 708, 833
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	4 cut(s)	609, 625, 879, 1016
MluNI	TGGCCA	1 cut(s)	750
Mox20I	TGGCCA	1 cut(s)	750
Mph1103I	ATGCAT	1 cut(s)	928
MroI	TCCGGA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	4 cut(s)	54, 567, 782, 848
Msp20I	TGGCCA	1 cut(s)	750
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	4 cut(s)	547, 572, 603, 1053
MunI	CAATTG	1 cut(s)	879
Mva1269I	GAATGC	2 cut(s)	250, 878
MvaI	CCWGG	4 cut(s)	547, 572, 603, 1053
MwoI	GCNNNNNNNGC	5 cut(s)	366, 375, 756, 1064, 1171
NdeII	GATC	5 cut(s)	291, 349, 387, 961, 1101
NlaIII	CATG	5 cut(s)	244, 860, 930, 1174, 1201
NlaIV	GGNNCC	2 cut(s)	199, 594
NmuCI	GTSAC	4 cut(s)	514, 574, 902, 1008
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	1 cut(s)	860
PciI	ACATGT	1 cut(s)	856
PctI	GAATGC	2 cut(s)	250, 878
PfeI	GAWTC	1 cut(s)	888
PflFI	GACNNNGTC	1 cut(s)	437
Ppu21I	YACGTR	2 cut(s)	902, 1211
PscI	ACATGT	1 cut(s)	856
Psp6I	CCWGG	4 cut(s)	545, 570, 601, 1051
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	4 cut(s)	545, 570, 601, 1051
PspN4I	GGNNCC	2 cut(s)	199, 594
PspPI	GGNCC	4 cut(s)	197, 615, 930, 1060
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	5 cut(s)	239, 539, 594, 1209, 1213
RsaNI	GTAC	5 cut(s)	238, 538, 593, 1208, 1212
SaqAI	TTAA	4 cut(s)	54, 567, 782, 848
Sau3AI	GATC	5 cut(s)	291, 349, 387, 961, 1101
Sau96I	GGNCC	4 cut(s)	197, 615, 930, 1060
ScrFI	CCNGG	4 cut(s)	547, 572, 603, 1053
SduI	GDGCHC	3 cut(s)	696, 708, 833
SexAI	ACCWGGT	1 cut(s)	570
SfaNI	GCATC	1 cut(s)	727
SinI	GGWCC	1 cut(s)	197
SnaBI	TACGTA	1 cut(s)	1211
Sse9I	AATT	4 cut(s)	609, 625, 879, 1016
SsiI	CCGC	4 cut(s)	158, 527, 1058, 1117
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	4 cut(s)	545, 570, 601, 1051
TaaI	ACNGT	6 cut(s)	179, 281, 471, 542, 913, 1216
TaiI	ACGT	7 cut(s)	23, 82, 338, 484, 904, 1075, 1213
TaqI	TCGA	4 cut(s)	166, 297, 384, 823
TasI	AATT	4 cut(s)	609, 625, 879, 1016
TfiI	GAWTC	1 cut(s)	888
Tru1I	TTAA	4 cut(s)	54, 567, 782, 848
Tru9I	TTAA	4 cut(s)	54, 567, 782, 848
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	4 cut(s)	514, 574, 902, 1008
Tsp45I	GTSAC	4 cut(s)	514, 574, 902, 1008
TspDTI	ATGAA	7 cut(s)	22, 40, 257, 671, 728, 852, 885
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	359
Tth111I	GACNNNGTC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	609, 1016
XceI	RCATGY	1 cut(s)	860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XspI	CTAG	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.