Prupe.6G229900_v2.0.a1

Alkaline neutral invertase CINV2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
23318823 .. 23320506
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G229900.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 1128 bp
ATGAACCTCCTGCAGGTTTTTGTGAGAGACTTTGTCCCTAGTGGTTTGGCCAGACTCATGAAAAATGACCCCGATGGACAAAGTGTAAAGACTTTCCTGCTACAGACCCCGCGCCTCCAAGGTTGGGGGACGGCTATTGATGAATTTACACCTGTAAGAGCTGAACCTGTAGATTCTGCTTTATGGTGGATCGTTTTATTGAGATCATACATCGAAGGCACTGGTGACCGTACATTCAAAGAGAATCTTGAGGTGCAGAAGGCGTTGAAACTAATTTTCCACCGTTTCCTGTCAGTTAGCTTTGACACATTCCCGACACTTCTCTGTGCAGACGGATGTTGCATGATTGATAGCAGGATGGTGAGGATTCATGGTTATCCAATTGAGATTCAAGCTCTTTTCTACTTTGCATTGAGGTGTGCATGGGGACTGTTGGAGCAAGAGCTACATGCTAAGGAACTCCTTGAGCAAATAGATAAGCGCCTCACAGATCTACGCTTTCACATCCAGAACTATTACTGGCTTGATGTTGCACAGCTAAACAACATATACCGCTACAAAACCAAGGAGTATTCCTCTACTGCTGCCGGCAAGTTTAATGTCGTTCCAGATTCCATCCCTGCATGGGTTTTTGATTTCATGCCGTTGCGAGGAGGGTGGTTTTTAGTGGGGAATTGTATTGCCATCCTTAGCTCTCTAGCAACACCTGAGCAAGCTACAGCTATTATGGACTTGATTGAAGAGCACTGGGAGGTCTTGATTGGGGAGATACCCCTGAAAATTGCGTACCCAGCATTAGAGGGACATGAGTGGAGGGTTATCACAGGGTCTGATCCGAAGAACACGGCATGGAGTTATCACAATGGTGGCTCGTGGCCAACACTGCTTTGGTTGTTTACCGCGGCATGTATCAAGGCTAGCAGGCTGGAGATGGCGAAGAGAGCCATCGAACAAGTGGAGCAGCGGATGTCGAAAGACAATTGGCCAGAGTACTATGACGGAAAGGTGGGCAGATACGTAGGCATGGAAGCAAGAAAGTTGGTGCCGAGGACCGTCGCAGGATATCTGGTGACCAAACTGATGATGGAAAACCCTGCTACACTTCATGTAGTCTCTCTTCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_100

Protein Analysis

376

Amino Acids

43.02

Weight (kDa)

6.27

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 1042
AccII CGCG 2 cut(s) 112, 902
AciI CCGC 5 cut(s) 110, 553, 900, 902, 964
AclWI GGATC 2 cut(s) 197, 827
AcoI YGGCCR 3 cut(s) 48, 875, 983
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 3 cut(s) 232, 788, 992
AfiI CCNNNNNNNGG 4 cut(s) 13, 124, 625, 650
AgsI TTSAA 5 cut(s) 238, 268, 392, 740, 1121
AleI CACNNNNGTG 1 cut(s) 864
AluBI AGCT 8 cut(s) 161, 300, 395, 445, 538, 693, 716, 722
AluI AGCT 8 cut(s) 161, 300, 395, 445, 538, 693, 716, 722
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 21, 1117
AlwI GGATC 2 cut(s) 197, 827
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 3 cut(s) 48, 875, 983
ApeKI GCWGC 2 cut(s) 584, 961
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 2 cut(s) 114, 483
AspS9I GGNCC 1 cut(s) 1050
AsuHPI GGTGA 3 cut(s) 236, 373, 1081
AsuNHI GCTAGC 1 cut(s) 917
AvaII GGWCC 1 cut(s) 1050
BalI TGGCCA 3 cut(s) 50, 877, 985
BanI GGYRCC 1 cut(s) 1042
BarI GAAGNNNNNNTAC 1 cut(s) 1101
BauI CACGAG 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 571, 973
BccI CCATC 7 cut(s) 68, 352, 623, 692, 925, 953, 1078
BceAI ACGGC 3 cut(s) 147, 628, 861
BcoDI GTCTC 2 cut(s) 21, 1117
BfaI CTAG 3 cut(s) 39, 698, 918
BfmI CTRYAG 4 cut(s) 11, 101, 168, 717
BfoI RGCGCY 1 cut(s) 484
BfuAI ACCTGC 1 cut(s) 4
BglII AGATCT 1 cut(s) 490
BisI GCNGC 3 cut(s) 585, 903, 962
BlsI GCNGC 3 cut(s) 586, 904, 963
BmcAI AGTACT 1 cut(s) 992
Bme18I GGWCC 1 cut(s) 1050
BmgT120I GGNCC 1 cut(s) 1050
BmiI GGNNCC 1 cut(s) 1044
BmrI ACTGGG 1 cut(s) 757
BmtI GCTAGC 1 cut(s) 921
BmuI ACTGGG 1 cut(s) 757
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 1 cut(s) 947
Bpu10I CCTNAGC 3 cut(s) 453, 689, 708
BpuEI CTTGAG 2 cut(s) 269, 485
BsaAI YACGTR 1 cut(s) 1018
BsaJI CCNNGG 4 cut(s) 118, 564, 900, 1046
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 124, 625, 650
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 3 cut(s) 226, 524, 752
BseDI CCNNGG 4 cut(s) 118, 564, 900, 1046
BseGI GGATG 6 cut(s) 341, 363, 504, 615, 684, 972
BseLI CCNNNNNNNGG 4 cut(s) 13, 124, 625, 650
BseMII CTCAG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 226, 524, 752
BseRI GAGGAG 1 cut(s) 666
BseXI GCAGC 2 cut(s) 571, 973
BseYI CCCAGC 1 cut(s) 790
BsgI GTGCAG 2 cut(s) 275, 348
Bsh1236I CGCG 2 cut(s) 112, 902
BshFI GGCC 3 cut(s) 50, 877, 985
BshNI GGYRCC 1 cut(s) 1042
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 1 cut(s) 588
BslFI GGGAC 4 cut(s) 20, 142, 441, 816
BslI CCNNNNNNNGG 4 cut(s) 13, 124, 625, 650
BsmAI GTCTC 2 cut(s) 21, 1117
BsmFI GGGAC 4 cut(s) 20, 142, 441, 816
BsnI GGCC 3 cut(s) 50, 877, 985
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 4 cut(s) 189, 203, 490, 832
BspACI CCGC 5 cut(s) 110, 553, 900, 902, 964
BspANI GGCC 3 cut(s) 50, 877, 985
BspCNI CTCAG 1 cut(s) 700
BspFNI CGCG 2 cut(s) 112, 902
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 1044
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 921
BspPI GGATC 2 cut(s) 197, 827
BspQI GCTCTTC 1 cut(s) 735
BspT107I GGYRCC 1 cut(s) 1042
BsrFI RCCGGY 1 cut(s) 587
BsrI ACTGG 3 cut(s) 226, 524, 752
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 4 cut(s) 118, 564, 900, 1046
BssMI GATC 4 cut(s) 189, 203, 490, 832
BssSI CACGAG 1 cut(s) 871
BssT1I CCWWGG 2 cut(s) 118, 564
Bst2BI CACGAG 1 cut(s) 871
Bst4CI ACNGT 4 cut(s) 230, 284, 432, 1054
Bst6I CTCTTC 3 cut(s) 735, 932, 1122
BstBAI YACGTR 1 cut(s) 1018
BstC8I GCNNGC 4 cut(s) 589, 714, 919, 923
BstDEI CTNAG 3 cut(s) 453, 689, 708
BstDSI CCRYGG 1 cut(s) 900
BstEII GGTNACC 2 cut(s) 224, 1069
BstENI CCTNNNNNAGG 1 cut(s) 11
BstF5I GGATG 6 cut(s) 341, 363, 504, 615, 684, 972
BstFNI CGCG 2 cut(s) 112, 902
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 2 cut(s) 114, 483
BstKTI GATC 4 cut(s) 192, 206, 493, 835
BstMAI GTCTC 2 cut(s) 21, 1117
BstMBI GATC 4 cut(s) 189, 203, 490, 832
BstMWI GCNNNNNNNGC 3 cut(s) 791, 883, 941
BstNSI RCATGY 2 cut(s) 452, 909
BstPI GGTNACC 2 cut(s) 224, 1069
BstSFI CTRYAG 4 cut(s) 11, 101, 168, 717
BstSNI TACGTA 1 cut(s) 1018
BstUI CGCG 2 cut(s) 112, 902
BstV1I GCAGC 2 cut(s) 571, 973
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 3 cut(s) 50, 877, 985
BtgI CCRYGG 1 cut(s) 900
BtsCI GGATG 6 cut(s) 341, 363, 504, 615, 684, 972
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 3 cut(s) 219, 745, 881
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 4 cut(s) 589, 714, 919, 923
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 1 cut(s) 57
CfoI GCGC 2 cut(s) 114, 483
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 1 cut(s) 1050
Cfr42I CCGCGG 1 cut(s) 903
Csp6I GTAC 3 cut(s) 231, 787, 991
CviQI GTAC 3 cut(s) 231, 787, 991
DdeI CTNAG 3 cut(s) 453, 689, 708
DpnI GATC 4 cut(s) 191, 205, 492, 834
DpnII GATC 4 cut(s) 189, 203, 490, 832
EaeI YGGCCR 3 cut(s) 48, 875, 983
Eam1104I CTCTTC 3 cut(s) 735, 932, 1122
EarI CTCTTC 3 cut(s) 735, 932, 1122
Eco105I TACGTA 1 cut(s) 1018
Eco130I CCWWGG 2 cut(s) 118, 564
Eco32I GATATC 1 cut(s) 1064
Eco47I GGWCC 1 cut(s) 1050
Eco91I GGTNACC 2 cut(s) 224, 1069
EcoNI CCTNNNNNAGG 1 cut(s) 11
EcoO65I GGTNACC 2 cut(s) 224, 1069
EcoRV GATATC 1 cut(s) 1064
EcoT14I CCWWGG 2 cut(s) 118, 564
ErhI CCWWGG 2 cut(s) 118, 564
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 4 cut(s) 20, 142, 441, 816
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 585, 903, 962
FokI GGATG 6 cut(s) 348, 370, 491, 602, 671, 979
Fsp4HI GCNGC 3 cut(s) 585, 903, 962
FspBI CTAG 3 cut(s) 39, 698, 918
GlaI GCGC 2 cut(s) 113, 482
GluI GCNGC 3 cut(s) 585, 903, 962
GsaI CCCAGC 1 cut(s) 794
GsuI CTGGAG 1 cut(s) 947
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 3 cut(s) 50, 877, 985
HapII CCGG 1 cut(s) 588
HhaI GCGC 2 cut(s) 114, 483
Hin6I GCGC 2 cut(s) 112, 481
HinP1I GCGC 2 cut(s) 112, 481
HinfI GANTC 6 cut(s) 54, 173, 244, 367, 388, 611
HpaII CCGG 1 cut(s) 588
HphI GGTGA 3 cut(s) 236, 373, 1081
Hpy166II GTNNAC 1 cut(s) 897
Hpy188I TCNGA 2 cut(s) 832, 837
Hpy188III TCNNGA 6 cut(s) 58, 248, 313, 508, 608, 757
Hpy8I GTNNAC 1 cut(s) 897
Hpy99I CGWCG 1 cut(s) 1058
HpyAV CCTTC 2 cut(s) 209, 253
HpyCH4III ACNGT 4 cut(s) 230, 284, 432, 1054
HpyCH4IV ACGT 1 cut(s) 1017
HpyCH4V TGCA 8 cut(s) 13, 256, 329, 342, 410, 422, 533, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 791, 883, 941
HpyF3I CTNAG 3 cut(s) 453, 689, 708
HpySE526I ACGT 1 cut(s) 1017
HspAI GCGC 2 cut(s) 112, 481
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
KspI CCGCGG 1 cut(s) 903
Kzo9I GATC 4 cut(s) 189, 203, 490, 832
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 436, 958
Lsp1109I GCAGC 2 cut(s) 571, 973
MaeI CTAG 3 cut(s) 39, 698, 918
MaeII ACGT 1 cut(s) 1017
MaeIII GTNAC 2 cut(s) 224, 1069
MalI GATC 4 cut(s) 191, 205, 492, 834
MboI GATC 4 cut(s) 189, 203, 490, 832
MboII GAAGA 4 cut(s) 752, 850, 949, 1109
MfeI CAATTG 2 cut(s) 381, 979
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 747
MlsI TGGCCA 3 cut(s) 50, 877, 985
MluCI AATT 7 cut(s) 143, 273, 381, 673, 780, 979, 1123
MluNI TGGCCA 3 cut(s) 50, 877, 985
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 414
Mox20I TGGCCA 3 cut(s) 50, 877, 985
MroNI GCCGGC 1 cut(s) 587
MscI TGGCCA 3 cut(s) 50, 877, 985
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 2 cut(s) 415, 864
Msp20I TGGCCA 3 cut(s) 50, 877, 985
MspA1I CMGCKG 2 cut(s) 902, 964
MspI CCGG 1 cut(s) 588
MunI CAATTG 2 cut(s) 381, 979
MvnI CGCG 2 cut(s) 112, 902
MwoI GCNNNNNNNGC 3 cut(s) 791, 883, 941
NaeI GCCGGC 1 cut(s) 589
NdeII GATC 4 cut(s) 189, 203, 490, 832
NgoMIV GCCGGC 1 cut(s) 587
NheI GCTAGC 1 cut(s) 917
NlaIV GGNNCC 1 cut(s) 1044
NmeAIII GCCGAG 1 cut(s) 1071
NmuCI GTSAC 2 cut(s) 224, 1069
NspI RCATGY 2 cut(s) 452, 909
OliI CACNNNNGTG 1 cut(s) 864
PagI TCATGA 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 735
PdiI GCCGGC 1 cut(s) 589
PfeI GAWTC 5 cut(s) 173, 244, 367, 388, 611
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 586, 904, 963
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 1018
PspEI GGTNACC 2 cut(s) 224, 1069
PspFI CCCAGC 1 cut(s) 790
PspN4I GGNNCC 1 cut(s) 1044
PspPI GGNCC 1 cut(s) 1050
PstI CTGCAG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 3 cut(s) 232, 788, 992
RsaNI GTAC 3 cut(s) 231, 787, 991
RseI CAYNNNNRTG 2 cut(s) 415, 864
SacII CCGCGG 1 cut(s) 903
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 3 cut(s) 585, 903, 962
Sau3AI GATC 4 cut(s) 189, 203, 490, 832
Sau96I GGNCC 1 cut(s) 1050
SbfI CCTGCAGG 1 cut(s) 15
ScaI AGTACT 1 cut(s) 992
SchI GAGTC 1 cut(s) 48
SdaI CCTGCAGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 747
SfcI CTRYAG 4 cut(s) 11, 101, 168, 717
Sfr303I CCGCGG 1 cut(s) 903
SgrBI CCGCGG 1 cut(s) 903
SinI GGWCC 1 cut(s) 1050
SmiMI CAYNNNNRTG 2 cut(s) 415, 864
SmlI CTYRAG 2 cut(s) 248, 464
SmoI CTYRAG 2 cut(s) 248, 464
SnaBI TACGTA 1 cut(s) 1018
Sse8387I CCTGCAGG 1 cut(s) 15
Sse9I AATT 7 cut(s) 143, 273, 381, 673, 780, 979, 1123
SsiI CCGC 5 cut(s) 110, 553, 900, 902, 964
SspMI CTAG 3 cut(s) 39, 698, 918
StyI CCWWGG 2 cut(s) 118, 564
TaaI ACNGT 4 cut(s) 230, 284, 432, 1054
TaiI ACGT 1 cut(s) 1020
TaqI TCGA 3 cut(s) 213, 948, 971
TasI AATT 7 cut(s) 143, 273, 381, 673, 780, 979, 1123
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 905
TfiI GAWTC 5 cut(s) 173, 244, 367, 388, 611
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 3 cut(s) 226, 752, 888
TseFI GTSAC 2 cut(s) 224, 1069
TseI GCWGC 2 cut(s) 584, 961
Tsp45I GTSAC 2 cut(s) 224, 1069
TspDTI ATGAA 6 cut(s) 17, 74, 156, 359, 628, 1094
TspGWI ACGGA 2 cut(s) 348, 1014
TspRI CASTG 3 cut(s) 226, 752, 888
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 1050
XagI CCTNNNNNAGG 1 cut(s) 11
XapI RAATTY 1 cut(s) 143
XceI RCATGY 2 cut(s) 452, 909
XcmI CCANNNNNNNNNTGG 3 cut(s) 885, 952, 1081
XspI CTAG 3 cut(s) 39, 698, 918
ZrmI AGTACT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.