Prupe.6G236500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
23725754 .. 23726819
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G236500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 276 bp
ATGTCTAATAAGGAAGTTGAGGAGGAAAGAAGGCTATATCAGTGTGCAAGGAATTATGAAAAAATTGTAAAACAGTTTGATGAGCTGATTGAGATGATGAACACCCGGAGCAGACTGCCGAAGCGACGAAAGAATTCTACAACTGCTGCCCCTGCCCCGGCAAGTCAACATGAGGACAATGAAGTGTTTGCACAGACAATAACAAGATTTCTCCAGGACCTGAGAACCAACCCTGCAGAACCTGACTGCTCCACAGCCCCCGGAGATGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.49

Weight (kDa)

5.83

Isoelectric Point (pI)

77.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029014)

Species Orthologous Gene IDs
prunus_persica Prupe.6G236500_v2.0.a1
rosa_rugosa Rorug03G0102800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 157, 266
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AlwNI CAGNNNCTG 2 cut(s) 220, 242
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 3 cut(s) 106, 158, 261
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 215
BcnI CCSGG 3 cut(s) 106, 158, 261
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 4 cut(s) 106, 158, 215, 261
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmrFI CCNGG 4 cut(s) 106, 158, 215, 261
BpmI CTGGAG 1 cut(s) 197
BpuMI CCSGG 3 cut(s) 106, 158, 261
BsaJI CCNNGG 2 cut(s) 156, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 266
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 156, 259
BseLI CCNNNNNNNGG 2 cut(s) 157, 266
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 133
BsiSI CCGG 3 cut(s) 106, 158, 261
BslI CCNNNNNNNGG 2 cut(s) 157, 266
BspCNI CTCAG 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 156, 259
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 4 cut(s) 104, 156, 213, 259
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 47
CaiI CAGNNNCTG 2 cut(s) 220, 242
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 1 cut(s) 170
CviJI RGCY 3 cut(s) 34, 85, 257
CviKI_1 RGCY 3 cut(s) 34, 85, 257
DdeI CTNAG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 173
FaiI YATR 3 cut(s) 37, 57, 171
FatI CATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 197
HapII CCGG 3 cut(s) 106, 158, 261
Hin1II CATG 1 cut(s) 173
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HpaII CCGG 3 cut(s) 106, 158, 261
Hpy166II GTNNAC 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 47, 191, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 173
LmnI GCTCC 2 cut(s) 108, 254
LpnPI CCDG 8 cut(s) 119, 165, 171, 200, 227, 233, 246, 255
Lsp1109I GCAGC 1 cut(s) 133
MluCI AATT 4 cut(s) 52, 63, 133, 271
MnlI CCTC 3 cut(s) 13, 16, 166
MroXI GAANNNNTTC 1 cut(s) 133
MspI CCGG 3 cut(s) 106, 158, 261
MspR9I CCNGG 4 cut(s) 106, 158, 215, 261
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 3 cut(s) 106, 158, 261
NlaIII CATG 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspPI GGNCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 217
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 2 cut(s) 220, 242
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 4 cut(s) 106, 158, 215, 261
SetI ASST 3 cut(s) 87, 222, 244
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 217
Sse9I AATT 4 cut(s) 52, 63, 133, 271
StyD4I CCNGG 4 cut(s) 104, 156, 213, 259
TaaI ACNGT 1 cut(s) 75
TasI AATT 4 cut(s) 52, 63, 133, 271
TscAI CASTG 1 cut(s) 47
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 3 cut(s) 72, 113, 195
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.