Prupe.6G242500_v2.0.a1

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
24080147 .. 24080759
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G242500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 582 bp
ATGTCACTCATCAGCATATGGAACTTTTTTGGTAGAGTCTTTTCTGTGTTTATCTCAGAAATCCTACTCATGAGAGACCAAATTCCAAGACCCCTTATGGTCACAATTGTCCTTGTCATAGCCACCACAGGCTACCTTCTCATTGCTTTCTCATTCCCTGGTGCTTTGTACATTGCTTCAGTGATCACTGGGTTCACATTAGGGGCTCAGTTGCCATTGGTTTACTCTATCATTTCTGAAATCTTTGGCTTGAAATACTATTCTACCCTTTTCAACTTTGGCCAATTGGCAAGTCCTCTTGGCTCTTATTTGCTCACTAGGAAGGACCTTGCAAAATTGGGCCAGACTAGGACCCAAGGGAAGGACCTCACCTGCATTGGAACTCATTGTTTTAAGATGGCTTTCATTATTTTGGCTGCAGTCACATTCTTTTCGGCTCTCGTTTCATTTATTTTGGTGGAGAGAGCCAAGCCATTCTACAAAGGTAACATATACAAAAAGTTAAGAGAGAATGCTGAGCAAGTCAAGGCTGAAGAGGTAGAAGAAATGGCTTCACCGTCATTTTCTAATGGATTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

194

Amino Acids

21.54

Weight (kDa)

9.37

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 2 cut(s) 162, 552
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 2 cut(s) 253, 274
AjnI CCWGG 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 2 cut(s) 280, 340
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 81
AspS9I GGNCC 4 cut(s) 325, 340, 351, 364
AsuHPI GGTGA 2 cut(s) 361, 546
AvaII GGWCC 3 cut(s) 325, 351, 364
BalI TGGCCA 1 cut(s) 282
BanII GRGCYC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 403
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 318, 348
BfmI CTRYAG 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 380
BisI GCNGC 1 cut(s) 417
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 3 cut(s) 325, 351, 364
BmgT120I GGNCC 4 cut(s) 325, 340, 351, 364
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 157, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 2 cut(s) 141, 171
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 157, 355
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 2 cut(s) 141, 171
BseMII CTCAG 3 cut(s) 69, 221, 507
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 403
BshFI GGCC 2 cut(s) 282, 342
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 2 cut(s) 282, 342
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 183
Bsp1720I GCTNAGC 1 cut(s) 516
BspANI GGCC 2 cut(s) 282, 342
BspCNI CTCAG 3 cut(s) 68, 220, 508
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 69
BsrDI GCAATG 2 cut(s) 141, 171
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 157, 355
BssMI GATC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 558
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 168
BstDEI CTNAG 3 cut(s) 55, 207, 516
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 282, 342
BtsIMutI CAGTG 2 cut(s) 186, 186
BveI ACCTGC 1 cut(s) 380
CciI TCATGA 1 cut(s) 69
Cfr13I GGNCC 4 cut(s) 325, 340, 351, 364
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 70
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 55, 207, 516
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 3 cut(s) 325, 351, 364
Eco57I CTGAAG 2 cut(s) 162, 552
EcoO109I RGGNCCY 3 cut(s) 325, 351, 364
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 73
FaiI YATR 7 cut(s) 17, 19, 71, 98, 119, 491, 493
FatI CATG 1 cut(s) 69
FauNDI CATATG 1 cut(s) 17
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 318, 348
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 282, 342
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 36
HphI GGTGA 2 cut(s) 361, 546
Hpy166II GTNNAC 2 cut(s) 195, 223
Hpy188I TCNGA 2 cut(s) 58, 238
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 195, 223
HpyAV CCTTC 3 cut(s) 146, 316, 355
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4V TGCA 3 cut(s) 332, 375, 419
HpyF3I CTNAG 3 cut(s) 55, 207, 516
Hsp92II CATG 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 114, 144, 171, 174, 356, 385
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 2 cut(s) 318, 348
MaeIII GTNAC 4 cut(s) 3, 100, 421, 485
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 545, 554
MfeI CAATTG 2 cut(s) 105, 284
MhlI GDGCHC 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 4 cut(s) 81, 105, 284, 335
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 3 cut(s) 306, 377, 529
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 3 cut(s) 393, 503, 576
Msp20I TGGCCA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 2 cut(s) 105, 284
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 1 cut(s) 159
NdeI CATATG 1 cut(s) 17
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 3 cut(s) 3, 100, 421
PagI TCATGA 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 380
PctI GAATGC 1 cut(s) 517
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 3 cut(s) 325, 351, 364
Psp5II RGGWCCY 3 cut(s) 325, 351, 364
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 4 cut(s) 325, 340, 351, 364
PspPPI RGGWCCY 3 cut(s) 325, 351, 364
PstI CTGCAG 1 cut(s) 421
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 393, 503, 576
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 4 cut(s) 325, 340, 351, 364
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 208
SetI ASST 6 cut(s) 138, 330, 369, 374, 487, 540
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 3 cut(s) 325, 351, 364
SmiI ATTTAAAT 1 cut(s) 577
Sse9I AATT 4 cut(s) 81, 105, 284, 335
SspMI CTAG 2 cut(s) 318, 348
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 355
SwaI ATTTAAAT 1 cut(s) 577
TaaI ACNGT 1 cut(s) 558
TasI AATT 4 cut(s) 81, 105, 284, 335
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 3 cut(s) 393, 503, 576
Tru9I TTAA 3 cut(s) 393, 503, 576
TscAI CASTG 2 cut(s) 186, 193
TseFI GTSAC 3 cut(s) 3, 100, 421
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 3 cut(s) 3, 100, 421
TspDTI ATGAA 2 cut(s) 394, 435
TspRI CASTG 2 cut(s) 186, 193
VpaK11BI GGWCC 3 cut(s) 325, 351, 364
XapI RAATTY 1 cut(s) 81
XspI CTAG 2 cut(s) 318, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.